cis; GGCCTTA

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GGCCTTA

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GGCCTTA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.69At4g3093050S ribosomal protein L21, mitochondrial (RPL21M) ((WRKY32)) WRKY
0.67At1g71260expressed protein WHIRLY
0.64At3g57150dyskerin, putative / nucleolar protein NAP57, putative ((NAP57)) NAC
0.60At1g14410DNA-binding protein-related WHIRLY
-0.60At3g02340zinc finger (C3HC4-type RING finger) family protein C3H
0.57At5g16070chaperonin, putative TCP
0.57At3g52910expressed protein GRF
0.57At1g27050homeobox-leucine zipper family protein Homeobox
0.53At1g72050zinc finger (C2H2 type) family protein C2H2
0.53At2g02740transcription factor, putative WHIRLY
-0.52At3g19580zinc finger (C2H2 type) protein 2 (AZF2) ((AZF2)) C2H2
0.52At5g02470DP-2 transcription factor, putative (DPA) ((DPA)) E2F-DP
-0.52At3g52800zinc finger (AN1-like) family protein C2H2
-0.52At1g08320bZIP family transcription factor bZIP
-0.51At1g19310zinc finger (C3HC4-type RING finger) family protein C3H

link to other 304 cis elements in ATTED

similar seq.
←GGCCTTA→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TAAGGCC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GGCCTTA1.000.0686
AATGGGC0.960.0988
AAGGCCC0.960.0884
GCCCAAT0.950.0874
AGGCCCA0.950.1186
ATGGGCT0.950.08100
GGCCCAA0.940.0962
ATGGGCC0.940.0987
TAATGGG0.940.0789
GCCCATA0.940.0881