cis; AGCCCAT


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of AGCCCAT

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of AGCCCAT.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.69At1g71260expressed protein WHIRLY
0.66At4g3093050S ribosomal protein L21, mitochondrial (RPL21M) ((WRKY32)) WRKY
0.61At3g52910expressed protein GRF
0.60At3g57150dyskerin, putative / nucleolar protein NAP57, putative ((NAP57)) NAC
0.60At1g14410DNA-binding protein-related WHIRLY
0.57At1g27050homeobox-leucine zipper family protein Homeobox
0.57At5g16070chaperonin, putative TCP
-0.56At1g19310zinc finger (C3HC4-type RING finger) family protein C3H
-0.56At3g02340zinc finger (C3HC4-type RING finger) family protein C3H
0.56At3g22780CXC domain protein (TSO1) ((TSO1)) CPP
-0.55At1g08320bZIP family transcription factor bZIP
-0.54At3g19580zinc finger (C2H2 type) protein 2 (AZF2) ((AZF2)) C2H2
0.54At2g02740transcription factor, putative WHIRLY
-0.53At5g66070zinc finger (C3HC4-type RING finger) family protein C3H
0.53At1g72050zinc finger (C2H2 type) family protein C2H2

link to other 304 cis elements in ATTED

similar seq.
AGCCCAT
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; ATGGGCT
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
AGCCCAT1.000.0992
GCCCATT0.990.1089
AAGCCCA0.990.1084
TGGGCTT0.980.0992
AAAGCCC0.980.0778
TAGGCCC0.980.0889
GGCCCAT0.980.1183
GCCCATA0.980.0881
GGGCTTT0.980.0790
CCCATTA0.970.0881