cis; CACTCCA

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
YACT    CACTFTPPCA1 [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CACTCCA

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CACTCCA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.57At5g59780myb family transcription factor (MYB59) ((MYB59)) MYB
-0.53At4g21550transcriptional factor B3 family protein ABI3VP1
0.51At5g15830bZIP transcription factor family protein bZIP
-0.46At2g42200squamosa promoter-binding protein-like 9 (SPL9) SBP
0.44At1g13300myb family transcription factor G2-like
-0.44At5g60910agamous-like MADS box protein AGL8 / FRUITFULL (AGL8) ((AGL8)) MADS
0.43At5g06800myb family transcription factor G2-like
-0.43At2g45650MADS-box protein (AGL6) ((AGL6)) MADS
-0.43At4g00870basic helix-loop-helix (bHLH) family protein BHLH
0.42At5g10030bZIP family transcription factor (OBF4) ((TGA4)) bZIP
-0.42At5g02030homeodomain protein (BELLRINGER) ((LSN)) Homeobox
-0.42At3g06220transcriptional factor B3 family protein REM
-0.42At4g18960floral homeotic protein AGAMOUS (AG) ((AG)) MADS
-0.41At3g54340floral homeotic protein APETALA3 (AP3) ((AP3)) MADS
-0.41At4g31610transcriptional factor B3 family protein / reproductive meristem protein 1 (REM1) ((REM1)) REM

link to other 304 cis elements in ATTED

similar seq.
←CACTCCA→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TGGAGTG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CACTCCA1.000.064
CAGCATG0.630.079