cis; CCAGAAC

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CCAGAAC

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CCAGAAC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.57At4g36990heat shock factor protein 4 (HSF4) / heat shock transcription factor 4 (HSTF4) ((AT-HSFB1, ATHSF4, HSF4)) HSF
0.54At3g28210zinc finger (AN1-like) family protein ((PMZ)) C2H2
0.54At5g04410no apical meristem (NAM) family protein ((NAC2)) NAC
0.53At5g05410DRE-binding protein (DREB2A) ((DREB2A)) AP2-EREBP
-0.49At2g24630glycosyl transferase family 2 protein ((ATCSLC08)) REM
0.48At1g32870no apical meristem (NAM) family protein NAC
0.48At1g42990bZIP transcription factor family protein bZIP
0.48At4g18880heat shock transcription factor 21 (HSF21) ((AT-HSFA4A)) HSF
0.48At5g20910zinc finger (C3HC4-type RING finger) family protein C3H
0.48At3g10800bZIP transcription factor family protein bZIP
0.48At2g26150heat shock transcription factor family protein ((ATHSFA2)) HSF
0.47At5g59820zinc finger (C2H2 type) family protein (ZAT12) ((RHL41)) C2H2
0.46At1g14200zinc finger (C3HC4-type RING finger) family protein C3H
0.46At5g04340zinc finger (C2H2 type) family protein ((C2H2)) C2H2
0.46At1g26800zinc finger (C3HC4-type RING finger) family protein C3H

link to other 304 cis elements in ATTED

similar seq.
←CCAGAAC→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GTTCTGG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CCAGAAC1.000.06114
TCCAGAA0.810.07104
TCTAGAA0.790.1580
TTCTAGA0.780.1188
GCCACGG0.750.06150
CTTCTAG0.740.1090
GCTGTAC0.730.0717
CTCCAGA0.720.0754
GCGAAGG0.700.0979
CTCTAGA0.700.1083