| functional annotation |
| Function |
B-box type zinc finger family protein |
Plant GARDEN Plant GARDEN JBrowse
|
| GO BP |
|
GO:0010100 [list] [network] negative regulation of photomorphogenesis
|
(16 genes)
|
IDA
|
 |
|
GO:0042752 [list] [network] regulation of circadian rhythm
|
(61 genes)
|
IEP
|
|
|
GO:0009640 [list] [network] photomorphogenesis
|
(80 genes)
|
IMP
|
|
|
GO:0007623 [list] [network] circadian rhythm
|
(123 genes)
|
IEP
|
|
|
GO:0045892 [list] [network] negative regulation of DNA-templated transcription
|
(205 genes)
|
IDA
IEP
|
|
|
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem
|
(287 genes)
|
IMP
|
|
|
GO:0006355 [list] [network] regulation of DNA-templated transcription
|
(1656 genes)
|
TAS
|
|
|
| GO CC |
|
| GO MF |
|
GO:0043621 [list] [network] protein self-association
|
(109 genes)
|
IPI
|
|
|
GO:0008270 [list] [network] zinc ion binding
|
(429 genes)
|
IEA
|
|
|
GO:0003700 [list] [network] DNA-binding transcription factor activity
|
(1576 genes)
|
ISS
|
|
|
GO:0005515 [list] [network] protein binding
|
(5066 genes)
|
IPI
|
|
|
| KEGG |
|
|
| Protein |
NP_001031811.1
NP_001190958.1
NP_001320162.1
NP_001320163.1
NP_001328010.1
NP_195607.2
|
| BLAST |
NP_001031811.1
NP_001190958.1
NP_001320162.1
NP_001320163.1
NP_001328010.1
NP_195607.2
|
| Orthologous |
[Ortholog page]
BBX18 (ath)
LOC4347644 (osa)
LOC7463992 (ppo)
LOC7470030 (ppo)
LOC7480165 (ppo)
LOC11420536 (mtr)
LOC18099222 (ppo)
LOC100527369 (gma)
LOC100780544 (gma)
LOC100795117 (gma)
LOC100818604 (gma)
LOC101264380 (sly)
LOC103835153 (bra)
LOC103842538 (bra)
LOC123104513 (tae)
LOC123112797 (tae)
LOC123122278 (tae)
LOC123400046 (hvu)
|
Subcellular
localization
wolf |
|
nucl 4,
mito 3,
chlo 1,
cyto 1,
cyto_mito 1,
mito_plas 1
|
(predict for NP_001031811.1)
|
|
cyto 8,
nucl 1,
plas 1,
cysk 1,
cysk_nucl 1,
nucl_plas 1,
cysk_plas 1
|
(predict for NP_001190958.1)
|
|
cyto 9,
nucl 1,
plas 1,
nucl_plas 1
|
(predict for NP_001320162.1)
|
|
nucl 4,
mito 3,
chlo 1,
cyto 1,
cyto_mito 1,
mito_plas 1
|
(predict for NP_001320163.1)
|
|
nucl 6,
cyto_nucl 4,
mito 2,
chlo 1
|
(predict for NP_001328010.1)
|
|
cyto 9,
nucl 1,
plas 1,
nucl_plas 1
|
(predict for NP_195607.2)
|
|
Subcellular
localization
TargetP |
|
other 5
|
(predict for NP_001031811.1)
|
|
scret 7
|
(predict for NP_001190958.1)
|
|
scret 7,
other 4
|
(predict for NP_001320162.1)
|
|
other 5
|
(predict for NP_001320163.1)
|
|
other 5
|
(predict for NP_001328010.1)
|
|
scret 7,
other 4
|
(predict for NP_195607.2)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| ath04712 |
Circadian rhythm - plant |
2 |
 |
Genes directly connected with BBX19 on the network
| coex z* |
Locus |
Function* |
CoexViewer |
Entrez Gene ID* |
| 12.8 |
LHY |
Homeodomain-like superfamily protein |
[detail] |
839341 |
| 10.9 |
CCA1 |
circadian clock associated 1 |
[detail] |
819296 |
| 10.5 |
RVE8 |
Homeodomain-like superfamily protein |
[detail] |
820117 |
| 10.4 |
AT4G15430 |
ERD (early-responsive to dehydration stress) family protein |
[detail] |
827214 |
| 9.9 |
BBX18 |
B-box zinc finger family protein |
[detail] |
816671 |
| 8.5 |
NDT1 |
NAD+ transporter 1 |
[detail] |
819362 |
| 7.5 |
AT1G26790 |
Dof-type zinc finger DNA-binding family protein |
[detail] |
839220 |
| 6.9 |
NF-YA4 |
nuclear factor Y, subunit A4 |
[detail] |
818037 |
| 6.8 |
AT5G15950 |
Adenosylmethionine decarboxylase family protein |
[detail] |
831452 |
| 6.2 |
AT5G67140 |
F-box/RNI-like superfamily protein |
[detail] |
836849 |
| 5.4 |
AT5G62130 |
Per1-like family protein |
[detail] |
836333 |
| 5.2 |
AT3G27350 |
transcriptional regulator ATRX-like protein |
[detail] |
822356 |
| 4.8 |
AT1G64530 |
Plant regulator RWP-RK family protein |
[detail] |
842761 |
|
Coexpressed
gene list |
[Coexpressed gene list for BBX19]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
252917_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
252917_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
252917_at
X axis is samples (xls file), and Y axis is log-expression.
|
At4g38960 Gene
