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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   TIC   time for coffee 
 ath-u.5   TIC   time for coffee 
 ath-r.7   TIC   time for coffee 
 ath-m.9   TIC   time for coffee 
 ath-m.4.bio   TIC   time for coffee 
 ath-m.4.hor   TIC   time for coffee 
 ath-m.4.lig   TIC   time for coffee 
 ath-m.4.str   TIC   time for coffee 
 ath-m.4.tis   TIC   time for coffee 
 bra-r.6   103834588   protein TIME FOR COFFEE 
 bra-r.6   103859954   protein TIME FOR COFFEE 
 bra-r.6   117125710   protein TIME FOR COFFEE-like 
 bna-r.1   125575014   protein TIME FOR COFFEE-like 
 bna-r.1   106352819   protein TIME FOR COFFEE-like 
 bna-r.1   106388249   protein TIME FOR COFFEE 
 ghi-r.1   107930476   protein TIME FOR COFFEE 
 ghi-r.1   107915503   protein TIME FOR COFFEE 
 ghi-r.1   121203125   protein TIME FOR COFFEE 
 cit-r.1   102620959   protein TIME FOR COFFEE 
 cit-r.1   102612366   protein TIME FOR COFFEE 
 gma-u.5   100783097   protein TIME FOR COFFEE 
 gma-u.5   100784698   protein TIME FOR COFFEE 
 gma-u.5   100799922   protein TIME FOR COFFEE 
 vvi-u.5   100256257   protein TIME FOR COFFEE 
 vvi-u.5   100252941   protein TIME FOR COFFEE 
 ppo-u.5   7480039   protein TIME FOR COFFEE 
 ppo-u.5   18099647   protein TIME FOR COFFEE 
 ppo-u.5   18096674   protein TIME FOR COFFEE 
 mtr-u.5   11429563   protein TIME FOR COFFEE 
 mtr-u.5   11415129   protein TIME FOR COFFEE 
 sly-u.5   101257597   protein TIME FOR COFFEE 
 sot-r.1   102592172   protein TIME FOR COFFEE 
 nta-r.1   107818208   protein TIME FOR COFFEE 
 nta-r.1   107826656   protein TIME FOR COFFEE 
 osa-u.5   4343665   protein TIME FOR COFFEE 
 zma-u.5   100502414   uncharacterized LOC100502414 
 zma-u.5   100381721   uncharacterized LOC100381721 
 tae-r.2   123052349   protein TIME FOR COFFEE 
 tae-r.2   123188194   protein TIME FOR COFFEE 
 hvu-r.1   123425631   protein TIME FOR COFFEE-like 
 sbi-r.1   8083901   protein TIME FOR COFFEE 
 bdi-r.1   100825357   protein TIME FOR COFFEE 

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Top 50 coexpressed genes to TIC (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TIC (ath-e.2 coexpression data)

CoexMap""


athTIC | Entrez gene ID : 821807      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 3 3 3 2 3 2 3 2 1 1 2 1 2 2 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
Function time for coffee
KEGG
GO BP
GO:0005982 [list] [network] starch metabolic process  (47 genes)  IMP  
GO:0042752 [list] [network] regulation of circadian rhythm  (59 genes)  IMP  
GO:0006979 [list] [network] response to oxidative stress  (384 genes)  IMP  
GO:0009414 [list] [network] response to water deprivation  (426 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IMP  
GO:0032502 [list] [network] developmental process  (3135 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
Protein NP_001118676.1 [sequence] [blastp]
NP_001326717.1 [sequence] [blastp]
NP_566705.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for NP_001118676.1)
nucl 9,  cyto_nucl 5  (predict for NP_001326717.1)
nucl 9,  cyto_nucl 5  (predict for NP_566705.1)
Subcellular
localization
TargetP
mito 6  (predict for NP_001118676.1)
mito 6  (predict for NP_001326717.1)
mito 6  (predict for NP_566705.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
TIC
ath-u.5
for
TIC
ath-r.7
for
TIC
ath-m.9
for
TIC
ath-m.4.bio
for
TIC
ath-m.4.hor
for
TIC
ath-m.4.lig
for
TIC
ath-m.4.str
for
TIC
ath-m.4.tis
for
TIC
bra-r.6
for
103834588
bra-r.6
for
103859954
bra-r.6
for
117125710
bna-r.1
for
125575014
bna-r.1
for
106352819
bna-r.1
for
106388249
ghi-r.1
for
107930476
ghi-r.1
for
107915503
ghi-r.1
for
121203125
cit-r.1
for
102620959
cit-r.1
for
102612366
gma-u.5
for
100783097
gma-u.5
for
100784698
gma-u.5
for
100799922
vvi-u.5
for
100256257
vvi-u.5
for
100252941
ppo-u.5
for
7480039
ppo-u.5
for
18099647
ppo-u.5
for
18096674
mtr-u.5
for
11429563
mtr-u.5
for
11415129
sly-u.5
for
101257597
sot-r.1
for
102592172
nta-r.1
for
107818208
nta-r.1
for
107826656
osa-u.5
for
4343665
zma-u.5
for
100502414
zma-u.5
for
100381721
tae-r.2
for
123052349
tae-r.2
for
123188194
hvu-r.1
for
123425631
sbi-r.1
for
8083901
bdi-r.1
for
100825357

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Ortholog ID: 3582
Species ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sot nta nta osa zma zma tae tae hvu hvu sbi bdi
Symbol TIC LOC103834588 LOC103859954 LOC117125710 LOC125575014 LOC106388249 LOC106433620 LOC107930476 LOC121210797 LOC107901704 LOC102620959 LOC102612366 LOC100784698 LOC102667391 LOC100808741 LOC100256257 LOC100252941 LOC18099647 LOC18096674 LOC7457865 LOC11429563 LOC11415129 LOC101257597 LOC102592172 LOC107818208 LOC107826656 LOC4343665 LOC100502414 LOC100381721 LOC123052349 LOC123188194 LOC123425631 LOC123397440 LOC8083901 LOC100825357
Function* time for coffee protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE-like protein TIME FOR COFFEE-like protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE uncharacterized LOC100502414 uncharacterized LOC100381721 protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE-like uncharacterized LOC123397440 protein TIME FOR COFFEE protein TIME FOR COFFEE
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 5
bra03250 Viral life cycle - HIV-1 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
bra03040 Spliceosome 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 5
bna00061 Fatty acid biosynthesis 2
bna00071 Fatty acid degradation 2
bna01212 Fatty acid metabolism 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 3
bdi03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821807 103834588 103859954 117125710 125575014 106388249 106433620 107930476 121210797 107901704 102620959 102612366 100784698 102667391 100808741 100256257 100252941 18099647 18096674 7457865 11429563 11415129 101257597 102592172 107818208 107826656 4343665 100502414 100381721 123052349 123188194 123425631 123397440 8083901 100825357
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