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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106388249   protein TIME FOR COFFEE 
 bna-r.1   125575014   protein TIME FOR COFFEE-like 
 bna-r.1   106453879   protein TIME FOR COFFEE 
 bna-r.1   106352819   protein TIME FOR COFFEE-like 
 bra-r.6   103859954   protein TIME FOR COFFEE 
 bra-r.6   117125710   protein TIME FOR COFFEE-like 
 bra-r.6   103834588   protein TIME FOR COFFEE 
 ath-u.5   TIC   time for coffee 
 ghi-r.1   121210797   protein TIME FOR COFFEE 
 ghi-r.1   121203125   protein TIME FOR COFFEE 
 ghi-r.1   107930476   protein TIME FOR COFFEE 
 cit-r.1   102620959   protein TIME FOR COFFEE 
 cit-r.1   102612366   protein TIME FOR COFFEE 
 gma-u.5   102667391   protein TIME FOR COFFEE 
 gma-u.5   100808741   protein TIME FOR COFFEE 
 gma-u.5   100799922   protein TIME FOR COFFEE 
 vvi-u.5   100252941   protein TIME FOR COFFEE 
 vvi-u.5   100256257   protein TIME FOR COFFEE 
 ppo-u.5   18096674   protein TIME FOR COFFEE 
 ppo-u.5   7457865   protein TIME FOR COFFEE 
 ppo-u.5   7459029   protein TIME FOR COFFEE 
 mtr-u.5   11415129   protein TIME FOR COFFEE 
 mtr-u.5   11429563   protein TIME FOR COFFEE 
 sly-u.5   101257597   protein TIME FOR COFFEE 
 sot-r.1   102592172   protein TIME FOR COFFEE 
 nta-r.1   107818208   protein TIME FOR COFFEE 
 nta-r.1   107826656   protein TIME FOR COFFEE 
 osa-u.5   4343665   protein TIME FOR COFFEE 
 zma-u.5   100381721   uncharacterized LOC100381721 
 zma-u.5   100502414   uncharacterized LOC100502414 
 tae-r.2   123052349   protein TIME FOR COFFEE 
 tae-r.2   123188194   protein TIME FOR COFFEE 
 hvu-r.1   123397440   uncharacterized LOC123397440 
 hvu-r.1   123425631   protein TIME FOR COFFEE-like 
 sbi-r.1   8083901   protein TIME FOR COFFEE 
 bdi-r.1   100825357   protein TIME FOR COFFEE 

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Top 50 coexpressed genes to 106388249 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106388249 (bna-r.1 coexpression data)

CoexMap"106388249"


bnaLOC106388249 | Entrez gene ID : 106388249    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 1 3 2 3 2 3 2 1 1 2 1 2 2 2 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042752 [list] [network] regulation of circadian rhythm  (59 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
Protein XP_048614711.1 [sequence] [blastp]
XP_048614712.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_048614711.1)
nucl 10  (predict for XP_048614712.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for XP_048614711.1)
other 7,  chlo 3  (predict for XP_048614712.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106388249
bna-r.1
for
125575014
bna-r.1
for
106453879
bna-r.1
for
106352819
bra-r.6
for
103859954
bra-r.6
for
117125710
bra-r.6
for
103834588
ath-u.5
for
TIC
ghi-r.1
for
121210797
ghi-r.1
for
121203125
ghi-r.1
for
107930476
cit-r.1
for
102620959
cit-r.1
for
102612366
gma-u.5
for
102667391
gma-u.5
for
100808741
gma-u.5
for
100799922
vvi-u.5
for
100252941
vvi-u.5
for
100256257
ppo-u.5
for
18096674
ppo-u.5
for
7457865
ppo-u.5
for
7459029
mtr-u.5
for
11415129
mtr-u.5
for
11429563
sly-u.5
for
101257597
sot-r.1
for
102592172
nta-r.1
for
107818208
nta-r.1
for
107826656
osa-u.5
for
4343665
zma-u.5
for
100381721
zma-u.5
for
100502414
tae-r.2
for
123052349
tae-r.2
for
123188194
hvu-r.1
for
123397440
hvu-r.1
for
123425631
sbi-r.1
for
8083901
bdi-r.1
for
100825357


Ortholog ID: 3582
Species bna bna bna bra bra bra ath ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sot nta nta osa zma zma tae tae hvu hvu sbi bdi
Symbol LOC106388249 LOC125575014 LOC106433620 LOC103859954 LOC117125710 LOC103834588 TIC LOC121210797 LOC107930476 LOC107901704 LOC102620959 LOC102612366 LOC102667391 LOC100808741 LOC100784698 LOC100252941 LOC100256257 LOC18096674 LOC7457865 LOC18099647 LOC11415129 LOC11429563 LOC101257597 LOC102592172 LOC107818208 LOC107826656 LOC4343665 LOC100381721 LOC100502414 LOC123052349 LOC123188194 LOC123397440 LOC123425631 LOC8083901 LOC100825357
Function* protein TIME FOR COFFEE protein TIME FOR COFFEE-like protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE-like protein TIME FOR COFFEE time for coffee protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE protein TIME FOR COFFEE uncharacterized LOC100381721 uncharacterized LOC100502414 protein TIME FOR COFFEE protein TIME FOR COFFEE uncharacterized LOC123397440 protein TIME FOR COFFEE-like protein TIME FOR COFFEE protein TIME FOR COFFEE
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 5
bna00061 Fatty acid biosynthesis 2
bna00071 Fatty acid degradation 2
bna01212 Fatty acid metabolism 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 5
bra03250 Viral life cycle - HIV-1 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
bra03040 Spliceosome 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 3
bdi03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106388249 125575014 106433620 103859954 117125710 103834588 821807 121210797 107930476 107901704 102620959 102612366 102667391 100808741 100784698 100252941 100256257 18096674 7457865 18099647 11415129 11429563 101257597 102592172 107818208 107826656 4343665 100381721 100502414 123052349 123188194 123397440 123425631 8083901 100825357
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