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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   AT4G25550   Cleavage/polyadenylation specificity factor, 25kDa subunit 
 ath-u.5   AT4G25550   Cleavage/polyadenylation specificity factor, 25kDa subunit 
 ath-r.7   AT4G25550   Cleavage/polyadenylation specificity factor, 25kDa subunit 
 ath-m.9   AT4G25550   Cleavage/polyadenylation specificity factor, 25kDa subunit 
 ath-m.4.bio   AT4G25550   Cleavage/polyadenylation specificity factor, 25kDa subunit 
 ath-m.4.hor   AT4G25550   Cleavage/polyadenylation specificity factor, 25kDa subunit 
 ath-m.4.lig   AT4G25550   Cleavage/polyadenylation specificity factor, 25kDa subunit 
 ath-m.4.str   AT4G25550   Cleavage/polyadenylation specificity factor, 25kDa subunit 
 ath-m.4.tis   AT4G25550   Cleavage/polyadenylation specificity factor, 25kDa subunit 
 bra-r.6   103834865   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 bra-r.6   103863315   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 bra-r.6   103861569   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 bna-r.1   106440849   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 bna-r.1   125598544   pre-mRNA cleavage factor Im 25 kDa subunit 2-like 
 bna-r.1   106361336   pre-mRNA cleavage factor Im 25 kDa subunit 2-like 
 ghi-r.1   107922941   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 ghi-r.1   107917707   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 ghi-r.1   107890737   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 cit-r.1   102607311   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 gma-u.5   100790200   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 gma-u.5   100306068   uncharacterized LOC100306068 
 vvi-u.5   100266110   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 vvi-u.5   100261950   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 ppo-u.5   7454504   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 mtr-u.5   25485080   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 sly-u.5   101268710   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 sly-u.5   101268418   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 sly-u.5   101249048   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 sot-r.1   102597325   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 sot-r.1   102584072   pre-mRNA cleavage factor Im 25 kDa subunit 2-like 
 nta-r.1   107762129   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 nta-r.1   107774067   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 nta-r.1   107804660   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 osa-u.5   4337444   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 zma-u.5   100273812   uncharacterized LOC100273812 
 zma-u.5   100282369   uncharacterized LOC100282369 
 tae-r.2   123191130   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 tae-r.2   123047512   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 tae-r.2   123055300   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 hvu-r.1   123448653   pre-mRNA cleavage factor Im 25 kDa subunit 2-like 
 hvu-r.1   123428491   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 sbi-r.1   8076486   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 bdi-r.1   100833966   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 bdi-r.1   100834278   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 cre-r.1   CHLRE_10g462700v5   uncharacterized protein 

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Top 50 coexpressed genes to AT4G25550 (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G25550 (ath-e.2 coexpression data)

CoexMap"828660"


athAT4G25550 | Entrez gene ID : 828660      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 3 3 3 1 2 2 1 1 3 2 3 1 2 3 2 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03015 [list] [network] mRNA surveillance pathway (119 genes)
GO BP
GO:0031124 [list] [network] mRNA 3'-end processing  (9 genes)  IEA  
GO:0006364 [list] [network] rRNA processing  (183 genes)  IMP  
GO CC
GO:0005849 [list] [network] mRNA cleavage factor complex  (7 genes)  IEA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_194285.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  mito 1,  extr 1,  pero 1,  cysk 1,  nucl_plas 1  (predict for NP_194285.2)
Subcellular
localization
TargetP
other 7  (predict for NP_194285.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
AT4G25550
ath-u.5
for
AT4G25550
ath-r.7
for
AT4G25550
ath-m.9
for
AT4G25550
ath-m.4.bio
for
AT4G25550
ath-m.4.hor
for
AT4G25550
ath-m.4.lig
for
AT4G25550
ath-m.4.str
for
AT4G25550
ath-m.4.tis
for
AT4G25550
bra-r.6
for
103834865
bra-r.6
for
103863315
bra-r.6
for
103861569
bna-r.1
for
106440849
bna-r.1
for
125598544
bna-r.1
for
106361336
ghi-r.1
for
107922941
ghi-r.1
for
107917707
ghi-r.1
for
107890737
cit-r.1
for
102607311
gma-u.5
for
100790200
gma-u.5
for
100306068
vvi-u.5
for
100266110
vvi-u.5
for
100261950
ppo-u.5
for
7454504
mtr-u.5
for
25485080
sly-u.5
for
101268710
sly-u.5
for
101268418
sly-u.5
for
101249048
sot-r.1
for
102597325
sot-r.1
for
102584072
nta-r.1
for
107762129
nta-r.1
for
107774067
nta-r.1
for
107804660
osa-u.5
for
4337444
zma-u.5
for
100273812
zma-u.5
for
100282369
tae-r.2
for
123191130
tae-r.2
for
123047512
tae-r.2
for
123055300
hvu-r.1
for
123448653
hvu-r.1
for
123428491
sbi-r.1
for
8076486
bdi-r.1
for
100833966
bdi-r.1
for
100834278
cre-r.1
for
CHLRE_10g462700v5


Ortholog ID: 3829
Species ath bra bra bra bna bna bna ghi ghi ghi cit gma gma vvi vvi ppo mtr sly sly sly sot sot nta nta nta osa zma zma tae tae tae hvu hvu sbi bdi bdi cre
Symbol AT4G25550 LOC103834865 LOC103863315 LOC103861569 LOC125598544 LOC106426406 LOC125598546 LOC107917707 LOC107890737 LOC107930261 LOC102607311 LOC100790200 LOC100306068 LOC100266110 LOC100261950 LOC7454504 LOC25485080 LOC101268710 LOC101268418 LOC101249048 LOC102597325 LOC102584072 LOC107762129 LOC107774067 LOC107811853 LOC4337444 LOC100273812 LOC100282369 LOC123191130 LOC123047512 LOC123064593 LOC123448653 LOC123428491 LOC8076486 LOC100833966 LOC100834278 CHLRE_10g462700v5
Function* Cleavage/polyadenylation specificity factor, 25kDa subunit pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2-like pre-mRNA cleavage factor Im 25 kDa subunit 2-like pre-mRNA cleavage factor Im 25 kDa subunit 2-like pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 uncharacterized LOC100306068 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2-like pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 uncharacterized LOC100273812 uncharacterized LOC100282369 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2-like pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 11
ath03040 Spliceosome 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
bra03040 Spliceosome 4
bra03015 mRNA surveillance pathway 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 16
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 16
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 12
gma03015 mRNA surveillance pathway 2
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 6
vvi04141 Protein processing in endoplasmic reticulum 2
vvi00020 Citrate cycle (TCA cycle) 2
vvi00620 Pyruvate metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00270 Cysteine and methionine metabolism 2
ppo00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 4
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta00010 Glycolysis / Gluconeogenesis 3
nta00030 Pentose phosphate pathway 3
nta00051 Fructose and mannose metabolism 3
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 7
nta00010 Glycolysis / Gluconeogenesis 4
nta00020 Citrate cycle (TCA cycle) 4
nta00260 Glycine, serine and threonine metabolism 4
nta00280 Valine, leucine and isoleucine degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03015 mRNA surveillance pathway 2
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
nta00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
osa03030 DNA replication 2
osa03410 Base excision repair 2
osa03082 ATP-dependent chromatin remodeling 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03015 mRNA surveillance pathway 2
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 3
zma03015 mRNA surveillance pathway 2
zma03083 Polycomb repressive complex 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae04712 Circadian rhythm - plant 4
tae03022 Basal transcription factors 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 9
tae00300 Lysine biosynthesis 8
tae03015 mRNA surveillance pathway 4
tae00470 D-Amino acid metabolism 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu01230 Biosynthesis of amino acids 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu04120 Ubiquitin mediated proteolysis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 4
sbi00510 N-Glycan biosynthesis 3
sbi00513 Various types of N-glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 5
bdi03420 Nucleotide excision repair 4
bdi03040 Spliceosome 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
bdi03015 mRNA surveillance pathway 2
bdi03420 Nucleotide excision repair 2
bdi03040 Spliceosome 2
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00260 Glycine, serine and threonine metabolism 2
cre00270 Cysteine and methionine metabolism 2
cre01200 Carbon metabolism 2
cre01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828660 103834865 103863315 103861569 125598544 106426406 125598546 107917707 107890737 107930261 102607311 100790200 100306068 100266110 100261950 7454504 25485080 101268710 101268418 101249048 102597325 102584072 107762129 107774067 107811853 4337444 100273812 100282369 123191130 123047512 123064593 123448653 123428491 8076486 100833966 100834278 5724162
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