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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   CFIM-25   homolog of CFIM-25 
 ath-u.5   CFIM-25   homolog of CFIM-25 
 ath-r.7   CFIM-25   homolog of CFIM-25 
 ath-m.9   CFIM-25   homolog of CFIM-25 
 ath-m.4.bio   CFIM-25   homolog of CFIM-25 
 ath-m.4.hor   CFIM-25   homolog of CFIM-25 
 ath-m.4.lig   CFIM-25   homolog of CFIM-25 
 ath-m.4.str   CFIM-25   homolog of CFIM-25 
 ath-m.4.tis   CFIM-25   homolog of CFIM-25 
 bra-r.6   103853276   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 bna-r.1   125609831   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 bna-r.1   106416611   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 ghi-r.1   107937716   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 ghi-r.1   107932259   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 ghi-r.1   107929890   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 cit-r.1   102626492   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 gma-u.5   100791216   cleavage factor CFIM-25-like protein 
 vvi-u.5   100250770   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 ppo-u.5   7484650   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 mtr-u.5   25486436   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 sot-r.1   102593421   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 nta-r.1   107784944   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 nta-r.1   107809284   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 osa-u.5   4345502   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 zma-u.5   100280946   cleavage and polyadenylation specificity factor 5 
 tae-r.2   123151266   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 tae-r.2   123160920   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 tae-r.2   123165686   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 hvu-r.1   123409947   pre-mRNA cleavage factor Im 25 kDa subunit 1-like 
 sbi-r.1   8070039   pre-mRNA cleavage factor Im 25 kDa subunit 1 
 bdi-r.1   100831657   pre-mRNA cleavage factor Im 25 kDa subunit 1 

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Top 50 coexpressed genes to CFIM-25 (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CFIM-25 (ath-e.2 coexpression data)

CoexMap"829104"


athCFIM-25 | Entrez gene ID : 829104      
Species ath bra bna ghi cit gma vvi ppo mtr sot nta osa zma tae hvu sbi bdi cre sly
Paralog 9 1 2 3 1 1 1 1 1 1 2 1 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03015 [list] [network] mRNA surveillance pathway (119 genes)
GO BP
GO:0031124 [list] [network] mRNA 3'-end processing  (9 genes)  IEA  
GO CC
GO:0005849 [list] [network] mRNA cleavage factor complex  (7 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_567835.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  mito 1,  cysk 1,  golg 1,  chlo_mito 1,  cysk_nucl 1  (predict for NP_567835.1)
Subcellular
localization
TargetP
other 9  (predict for NP_567835.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
CFIM-25
ath-u.5
for
CFIM-25
ath-r.7
for
CFIM-25
ath-m.9
for
CFIM-25
ath-m.4.bio
for
CFIM-25
ath-m.4.hor
for
CFIM-25
ath-m.4.lig
for
CFIM-25
ath-m.4.str
for
CFIM-25
ath-m.4.tis
for
CFIM-25
bra-r.6
for
103853276
bna-r.1
for
125609831
bna-r.1
for
106416611
ghi-r.1
for
107937716
ghi-r.1
for
107932259
ghi-r.1
for
107929890
cit-r.1
for
102626492
gma-u.5
for
100791216
vvi-u.5
for
100250770
ppo-u.5
for
7484650
mtr-u.5
for
25486436
sot-r.1
for
102593421
nta-r.1
for
107784944
nta-r.1
for
107809284
osa-u.5
for
4345502
zma-u.5
for
100280946
tae-r.2
for
123151266
tae-r.2
for
123160920
tae-r.2
for
123165686
hvu-r.1
for
123409947
sbi-r.1
for
8070039
bdi-r.1
for
100831657


Ortholog ID: 9612
Species ath bra bna bna ghi ghi ghi cit gma vvi ppo mtr sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol CFIM-25 LOC103853276 LOC125609831 LOC106416611 LOC107932259 LOC107929890 LOC107907121 LOC102626492 LOC100791216 LOC100250770 LOC7484650 LOC25486436 LOC102593421 LOC107784944 LOC107809284 LOC4345502 LOC100280946 LOC123151266 LOC123160920 LOC123165686 LOC123409947 LOC8070039 LOC100831657
Function* homolog of CFIM-25 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 cleavage factor CFIM-25-like protein pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 cleavage and polyadenylation specificity factor 5 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1-like pre-mRNA cleavage factor Im 25 kDa subunit 1 pre-mRNA cleavage factor Im 25 kDa subunit 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 2
ath04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00071 Fatty acid degradation 3
bra04146 Peroxisome 2
bra04136 Autophagy - other 2
bra00410 beta-Alanine metabolism 2
bra00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 4
bna04145 Phagosome 2
bna04148 Efferocytosis 2
bna04141 Protein processing in endoplasmic reticulum 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 3
bna04141 Protein processing in endoplasmic reticulum 2
bna03020 RNA polymerase 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi00908 Zeatin biosynthesis 2
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 5
ghi00908 Zeatin biosynthesis 4
ghi04075 Plant hormone signal transduction 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00941 Flavonoid biosynthesis 7
ghi04712 Circadian rhythm - plant 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 3
ppo00040 Pentose and glucuronate interconversions 2
ppo00051 Fructose and mannose metabolism 2
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00052 Galactose metabolism 6
mtr04120 Ubiquitin mediated proteolysis 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 6
nta04075 Plant hormone signal transduction 6
nta03015 mRNA surveillance pathway 2
nta00902 Monoterpenoid biosynthesis 2
nta00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta00020 Citrate cycle (TCA cycle) 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta01200 Carbon metabolism 2
nta01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00562 Inositol phosphate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
tae03015 mRNA surveillance pathway 3
tae00561 Glycerolipid metabolism 3
tae00564 Glycerophospholipid metabolism 3
tae04070 Phosphatidylinositol signaling system 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 4
hvu04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00561 Glycerolipid metabolism 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 6
bdi04016 MAPK signaling pathway - plant 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829104 103853276 125609831 106416611 107932259 107929890 107907121 102626492 100791216 100250770 7484650 25486436 102593421 107784944 107809284 4345502 100280946 123151266 123160920 123165686 123409947 8070039 100831657
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