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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   GCT   RNA polymerase II transcription mediator 
 ath-u.5   GCT   RNA polymerase II transcription mediator 
 ath-r.7   GCT   RNA polymerase II transcription mediator 
 ath-m.9   GCT   RNA polymerase II transcription mediator 
 ath-m.4.bio   GCT   RNA polymerase II transcription mediator 
 ath-m.4.hor   GCT   RNA polymerase II transcription mediator 
 ath-m.4.lig   GCT   RNA polymerase II transcription mediator 
 ath-m.4.str   GCT   RNA polymerase II transcription mediator 
 ath-m.4.tis   GCT   RNA polymerase II transcription mediator 
 bra-r.6   103871044   mediator of RNA polymerase II transcription subunit 13 
 bra-r.6   103829787   mediator of RNA polymerase II transcription subunit 13 
 bna-r.1   125601965   mediator of RNA polymerase II transcription subunit 13-like 
 bna-r.1   125609467   mediator of RNA polymerase II transcription subunit 13-like 
 bna-r.1   106345752   mediator of RNA polymerase II transcription subunit 13 
 ghi-r.1   107928302   mediator of RNA polymerase II transcription subunit 13 
 ghi-r.1   107909117   mediator of RNA polymerase II transcription subunit 13 
 cit-r.1   102621056   mediator of RNA polymerase II transcription subunit 13 
 gma-u.5   100782017   mediator of RNA polymerase II transcription subunit 13 
 gma-u.5   100781873   mediator of RNA polymerase II transcription subunit 13 
 vvi-u.5   100263945   mediator of RNA polymerase II transcription subunit 13 
 ppo-u.5   18094284   mediator of RNA polymerase II transcription subunit 13 
 ppo-u.5   7461357   mediator of RNA polymerase II transcription subunit 13 
 mtr-u.5   11437356   mediator of RNA polymerase II transcription subunit 13 
 sly-u.5   101261015   mediator of RNA polymerase II transcription subunit 13 
 sot-r.1   102578156   mediator of RNA polymerase II transcription subunit 13 
 nta-r.1   107792594   mediator of RNA polymerase II transcription subunit 13 
 nta-r.1   107796322   mediator of RNA polymerase II transcription subunit 13-like 
 nta-r.1   107812402   mediator of RNA polymerase II transcription subunit 13 
 osa-u.5   4338949   mediator of RNA polymerase II transcription subunit 13 
 zma-u.5   100279985   uncharacterized LOC100279985 
 tae-r.2   123054801   mediator of RNA polymerase II transcription subunit 13 
 tae-r.2   123087461   mediator of RNA polymerase II transcription subunit 13 
 tae-r.2   123190647   mediator of RNA polymerase II transcription subunit 13 
 hvu-r.1   123395232   mediator of RNA polymerase II transcription subunit 13-like 
 hvu-r.1   123428029   mediator of RNA polymerase II transcription subunit 13-like 
 sbi-r.1   8065361   mediator of RNA polymerase II transcription subunit 13 
 bdi-r.1   100834674   mediator of RNA polymerase II transcription subunit 13 

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Top 50 coexpressed genes to GCT (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GCT (ath-e.2 coexpression data)

CoexMap"841978"


athGCT | Entrez gene ID : 841978      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 2 1 1 1 3 1 1 3 2 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0090213 [list] [network] regulation of radial pattern formation  (2 genes)  IMP  
GO:0040034 [list] [network] regulation of development, heterochronic  (56 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001185237.1 [sequence] [blastp]
NP_001322788.1 [sequence] [blastp]
NP_001322789.1 [sequence] [blastp]
NP_849809.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  cyto 1,  mito 1,  pero 1,  cysk 1,  chlo_mito 1,  cyto_pero 1  (predict for NP_001185237.1)
nucl 5,  chlo 3,  cysk_nucl 3  (predict for NP_001322788.1)
nucl 5,  chlo 3,  cysk_nucl 3  (predict for NP_001322789.1)
nucl 5,  chlo 3,  cysk_nucl 3  (predict for NP_849809.2)
Subcellular
localization
TargetP
other 4,  mito 4  (predict for NP_001185237.1)
other 4,  mito 4  (predict for NP_001322788.1)
other 4,  mito 4  (predict for NP_001322789.1)
other 4,  mito 4  (predict for NP_849809.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
GCT
ath-u.5
for
GCT
ath-r.7
for
GCT
ath-m.9
for
GCT
ath-m.4.bio
for
GCT
ath-m.4.hor
for
GCT
ath-m.4.lig
for
GCT
ath-m.4.str
for
GCT
ath-m.4.tis
for
GCT
bra-r.6
for
103871044
bra-r.6
for
103829787
bna-r.1
for
125601965
bna-r.1
for
125609467
bna-r.1
for
106345752
ghi-r.1
for
107928302
ghi-r.1
for
107909117
cit-r.1
for
102621056
gma-u.5
for
100782017
gma-u.5
for
100781873
vvi-u.5
for
100263945
ppo-u.5
for
18094284
ppo-u.5
for
7461357
mtr-u.5
for
11437356
sly-u.5
for
101261015
sot-r.1
for
102578156
nta-r.1
for
107792594
nta-r.1
for
107796322
nta-r.1
for
107812402
osa-u.5
for
4338949
zma-u.5
for
100279985
tae-r.2
for
123054801
tae-r.2
for
123087461
tae-r.2
for
123190647
hvu-r.1
for
123395232
hvu-r.1
for
123428029
sbi-r.1
for
8065361
bdi-r.1
for
100834674


Ortholog ID: 6424
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta nta osa zma tae tae tae hvu hvu sbi bdi
Symbol GCT LOC103871044 LOC103829787 LOC125601965 LOC106345752 LOC106410568 LOC107928302 LOC107909117 LOC102621056 LOC100782017 LOC100781873 LOC100263945 LOC18094284 LOC7461357 LOC11437356 LOC101261015 LOC102578156 LOC107792594 LOC107796322 LOC107812402 LOC4338949 LOC100279985 LOC123087461 LOC123190647 LOC123046975 LOC123395232 LOC123428029 LOC8065361 LOC100834674
Function* RNA polymerase II transcription mediator mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13-like mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13-like mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 uncharacterized LOC100279985 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13-like mediator of RNA polymerase II transcription subunit 13-like mediator of RNA polymerase II transcription subunit 13 mediator of RNA polymerase II transcription subunit 13
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath04136 Autophagy - other 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
bra04136 Autophagy - other 2
bra04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 6
ghi03250 Viral life cycle - HIV-1 6
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 5
ghi03250 Viral life cycle - HIV-1 5
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 3
nta03083 Polycomb repressive complex 2
nta03250 Viral life cycle - HIV-1 2
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 3
nta03250 Viral life cycle - HIV-1 3
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 4
nta03083 Polycomb repressive complex 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 4
tae03083 Polycomb repressive complex 3
tae03250 Viral life cycle - HIV-1 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 3
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841978 103871044 103829787 125601965 106345752 106410568 107928302 107909117 102621056 100782017 100781873 100263945 18094284 7461357 11437356 101261015 102578156 107792594 107796322 107812402 4338949 100279985 123087461 123190647 123046975 123395232 123428029 8065361 100834674
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