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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   COR413-PM1   cold regulated 413 plasma membrane 1 
 ath-r.7   COR413-PM1   cold regulated 413 plasma membrane 1 
 ath-m.9   COR413-PM1   cold regulated 413 plasma membrane 1 
 ath-e.2   COR413-PM1   cold regulated 413 plasma membrane 1 
 ath-m.4.bio   COR413-PM1   cold regulated 413 plasma membrane 1 
 ath-m.4.hor   COR413-PM1   cold regulated 413 plasma membrane 1 
 ath-m.4.lig   COR413-PM1   cold regulated 413 plasma membrane 1 
 ath-m.4.str   COR413-PM1   cold regulated 413 plasma membrane 1 
 ath-m.4.tis   COR413-PM1   cold regulated 413 plasma membrane 1 
 ath-u.5   COR413-PM2   cold-regulated 413-plasma membrane 2 
 ath-u.5   AT4G37220   Cold acclimation protein WCOR413 family 
 bra-r.6   103835009   cold-regulated 413 plasma membrane protein 4 
 bra-r.6   103860441   cold-regulated 413 plasma membrane protein 1-like 
 bna-r.1   125598313   cold-regulated 413 plasma membrane protein 4-like 
 bna-r.1   106451353   cold-regulated 413 plasma membrane protein 2-like 
 bna-r.1   106445618   cold-regulated 413 plasma membrane protein 1 
 ghi-r.1   121209662   cold-regulated 413 plasma membrane protein 2 
 ghi-r.1   107898702   cold-regulated 413 plasma membrane protein 2 
 ghi-r.1   107911998   cold-regulated 413 plasma membrane protein 2 
 cit-r.1   102620025   cold-regulated 413 plasma membrane protein 2 
 cit-r.1   102614347   cold-regulated 413 plasma membrane protein 1 
 gma-u.5   COR1   cold-regulated protein 
 gma-u.5   100810337   cold-regulated 413 plasma membrane protein 2 
 gma-u.5   100811430   cold-regulated 413 plasma membrane protein 1 
 vvi-u.5   100267774   cold-regulated 413 plasma membrane protein 2 
 vvi-u.5   100248690   cold-regulated 413 plasma membrane protein 2 
 ppo-u.5   7480606   cold-regulated 413 plasma membrane protein 1 
 ppo-u.5   7456406   cold-regulated 413 plasma membrane protein 1 
 ppo-u.5   18101203   cold-regulated 413 plasma membrane protein 2 
 mtr-u.5   11414899   cold-regulated 413 plasma membrane protein 1 
 mtr-u.5   25482681   cold-regulated 413 plasma membrane protein 1 
 sly-u.5   101259505   cold-regulated 413 plasma membrane protein 2 
 sly-u.5   101259682   WCOR413-like plant cold acclimation protein 
 sot-r.1   102589207   cold-regulated 413 plasma membrane protein 2-like 
 sot-r.1   102596410   cold-regulated 413 plasma membrane protein 2-like 
 nta-r.1   107779465   cold-regulated 413 plasma membrane protein 1 
 nta-r.1   107819216   cold-regulated 413 plasma membrane protein 2 
 nta-r.1   107820253   cold-regulated 413 plasma membrane protein 2-like 
 osa-u.5   4334237   cold-regulated 413 plasma membrane protein 2 
 zma-u.5   100282221   cold acclimation protein COR413-PM1 
 zma-u.5   542099   Cold-regulated 413 plasma membrane protein 2 
 tae-r.2   543255   cold-regulated 413 plasma membrane protein 1 
 tae-r.2   543353   cold-regulated 413 plasma membrane protein 1 
 tae-r.2   123105150   cold-regulated 413 plasma membrane protein 1 
 hvu-r.1   123452399   cold-regulated 413 plasma membrane protein 1-like 
 hvu-r.1   123452401   cold-regulated 413 plasma membrane protein 1-like 
 sbi-r.1   8086182   cold-regulated 413 plasma membrane protein 2 
 bdi-r.1   100844112   cold-regulated 413 plasma membrane protein 1 

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Top 50 coexpressed genes to COR413-PM1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to COR413-PM1 (ath-u.5 coexpression data)

CoexMap"816092"


athCOR413-PM1 | Entrez gene ID : 816092      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 2 3 3 2 3 2 3 2 2 2 3 1 2 3 2 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042631 [list] [network] cellular response to water deprivation  (41 genes)  IEP  
GO:0009631 [list] [network] cold acclimation  (60 genes)  IEP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP  
GO CC
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  ISS  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
Protein NP_001189533.1 [sequence] [blastp]
NP_179196.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 3,  cyto 2,  vacu 2,  mito_plas 2  (predict for NP_001189533.1)
cyto 2,  vacu 2,  mito 1,  plas 1,  pero 1,  mito_plas 1  (predict for NP_179196.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001189533.1)
other 9  (predict for NP_179196.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
COR413-PM1
ath-r.7
for
COR413-PM1
ath-m.9
for
COR413-PM1
ath-e.2
for
COR413-PM1
ath-m.4.bio
for
COR413-PM1
ath-m.4.hor
for
COR413-PM1
ath-m.4.lig
for
COR413-PM1
ath-m.4.str
for
COR413-PM1
ath-m.4.tis
for
COR413-PM1
ath-u.5
for
COR413-PM2
ath-u.5
for
AT4G37220
bra-r.6
for
103835009
bra-r.6
for
103860441
bna-r.1
for
125598313
bna-r.1
for
106451353
bna-r.1
for
106445618
ghi-r.1
for
121209662
ghi-r.1
for
107898702
ghi-r.1
for
107911998
cit-r.1
for
102620025
cit-r.1
for
102614347
gma-u.5
for
COR1
gma-u.5
for
100810337
gma-u.5
for
100811430
vvi-u.5
for
100267774
vvi-u.5
for
100248690
ppo-u.5
for
7480606
ppo-u.5
for
7456406
ppo-u.5
for
18101203
mtr-u.5
for
11414899
mtr-u.5
for
25482681
sly-u.5
for
101259505
sly-u.5
for
101259682
sot-r.1
for
102589207
sot-r.1
for
102596410
nta-r.1
for
107779465
nta-r.1
for
107819216
nta-r.1
for
107820253
osa-u.5
for
4334237
zma-u.5
for
100282221
zma-u.5
for
542099
tae-r.2
for
543255
tae-r.2
for
543353
tae-r.2
for
123105150
hvu-r.1
for
123452399
hvu-r.1
for
123452401
sbi-r.1
for
8086182
bdi-r.1
for
100844112


Ortholog ID: 2376
Species ath ath ath bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu hvu sbi bdi
Symbol COR413-PM1 COR413-PM2 AT4G37220 LOC103835009 LOC103860669 LOC106445618 LOC106440012 LOC106425620 LOC121209662 LOC107911998 LOC107942145 LOC102620025 LOC102614347 LOC100810337 LOC100811430 LOC100817084 LOC100267774 LOC100248690 LOC7480606 LOC7456406 LOC18101203 LOC11414899 LOC25482681 LOC25482682 LOC101259505 LOC101259682 LOC102589207 LOC102596410 LOC107779465 LOC107819216 LOC107819619 LOC4334237 LOC100282221 LOC542099 LOC543255 LOC543353 LOC123122960 LOC123452399 LOC123452401 LOC8086182 LOC100844112
Function* cold regulated 413 plasma membrane 1 cold-regulated 413-plasma membrane 2 Cold acclimation protein WCOR413 family cold-regulated 413 plasma membrane protein 4 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 2 WCOR413-like plant cold acclimation protein cold-regulated 413 plasma membrane protein 2-like cold-regulated 413 plasma membrane protein 2-like cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 2 cold acclimation protein COR413-PM1 Cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 1 cold-regulated 413 plasma membrane protein 1-like cold-regulated 413 plasma membrane protein 1-like cold-regulated 413 plasma membrane protein 2 cold-regulated 413 plasma membrane protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00280 Valine, leucine and isoleucine degradation 8
ath00640 Propanoate metabolism 4
ath01210 2-Oxocarboxylic acid metabolism 4
ath01250 Biosynthesis of nucleotide sugars 3
ath00785 Lipoic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04082 Neuroactive ligand signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 12
ghi04016 MAPK signaling pathway - plant 2
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 3
vvi00260 Glycine, serine and threonine metabolism 2
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00670 One carbon pool by folate 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00562 Inositol phosphate metabolism 2
ppo04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 6
ppo04016 MAPK signaling pathway - plant 5
ppo02010 ABC transporters 3
ppo00073 Cutin, suberine and wax biosynthesis 2
ppo04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
ppo00190 Oxidative phosphorylation 2
ppo04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 2
mtr04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 4
sly00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
nta00970 Aminoacyl-tRNA biosynthesis 2
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
nta04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04145 Phagosome 5
osa00190 Oxidative phosphorylation 4
osa04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 5
zma04016 MAPK signaling pathway - plant 5
zma04075 Plant hormone signal transduction 5
zma04070 Phosphatidylinositol signaling system 4
zma00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi03250 Viral life cycle - HIV-1 2
sbi03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00480 Glutathione metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816092 824247 829876 103835009 103860669 106445618 106440012 106425620 121209662 107911998 107942145 102620025 102614347 100810337 100811430 100817084 100267774 100248690 7480606 7456406 18101203 11414899 25482681 25482682 101259505 101259682 102589207 102596410 107779465 107819216 107819619 4334237 100282221 542099 543255 543353 123122960 123452399 123452401 8086182 100844112
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