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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT2G16880   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-r.7   AT2G16880   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.9   AT2G16880   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-e.2   AT2G16880   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.bio   AT2G16880   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.hor   AT2G16880   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.lig   AT2G16880   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.str   AT2G16880   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.tis   AT2G16880   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100808380   pentatricopeptide repeat-containing protein At2g16880 
 vvi-u.5   100254777   pentatricopeptide repeat-containing protein At2g16880 
 ppo-u.5   7458638   pentatricopeptide repeat-containing protein At2g16880 
 mtr-u.5   25484953   pentatricopeptide repeat-containing protein At2g16880 
 sly-u.5   104645441   pentatricopeptide repeat-containing protein At2g16880 
 osa-u.5   9271741   pentatricopeptide repeat-containing protein At2g16880 
 zma-u.5   103632236   pentatricopeptide repeat-containing protein At2g16880 

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Top 50 coexpressed genes to AT2G16880 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G16880 (ath-u.5 coexpression data)

CoexMap"816189"


athAT2G16880 | Entrez gene ID : 816189      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_179280.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_179280.1)
Subcellular
localization
TargetP
other 7  (predict for NP_179280.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT2G16880

.
ath-r.7
for
AT2G16880

.
ath-m.9
for
AT2G16880

.
ath-e.2
for
AT2G16880

.
ath-m.4.bio
for
AT2G16880

.
ath-m.4.hor
for
AT2G16880

.
ath-m.4.lig
for
AT2G16880

.
ath-m.4.str
for
AT2G16880

.
ath-m.4.tis
for
AT2G16880

.
gma-u.5
for
100808380

.
vvi-u.5
for
100254777

.
ppo-u.5
for
7458638

.
mtr-u.5
for
25484953

.
sly-u.5
for
104645441

.
osa-u.5
for
9271741

.
zma-u.5
for
103632236

.


Ortholog ID: 11236
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT2G16880 LOC100808380 LOC104645441 LOC9271741 LOC103632236 LOC103846017 LOC100254777 LOC7458638 LOC25484953 LOC123093077 LOC123084980 LOC123449408 LOC121203005 LOC107948968 LOC106428678 LOC106394376 LOC8054235 LOC102596368 LOC102624240 LOC100836927 LOC107790367 LOC107786329
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880-like pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880 pentatricopeptide repeat-containing protein At2g16880 uncharacterized LOC107790367 uncharacterized LOC107786329
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00310 Lysine degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00310 Lysine degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816189 100808380 104645441 9271741 103632236 103846017 100254777 7458638 25484953 123093077 123084980 123449408 121203005 107948968 106428678 106394376 8054235 102596368 102624240 100836927 107790367 107786329
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