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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PUM1   pumilio 1 
 ath-r.7   PUM1   pumilio 1 
 ath-e.2   PUM1   pumilio 1 
 ath-u.5   PUM3   pumilio 3 
 ath-u.5   PUM2   pumilio 2 
 ath-u.5   PUM4   pumilio 4 
 bra-r.6   103859341   pumilio homolog 4 
 bra-r.6   103864952   pumilio homolog 1 
 bna-r.1   106446948   pumilio homolog 1 
 bna-r.1   106445423   pumilio homolog 1 
 bna-r.1   106439244   pumilio homolog 4 
 ghi-r.1   107950325   pumilio homolog 2 
 ghi-r.1   107943640   pumilio homolog 4 
 ghi-r.1   107942403   pumilio homolog 2 
 cit-r.1   102624631   pumilio homolog 4 
 cit-r.1   102625650   pumilio homolog 1-like 
 cit-r.1   102629221   pumilio homolog 2-like 
 gma-u.5   100818836   pumilio homolog 2 
 gma-u.5   100803806   pumilio homolog 2 
 gma-u.5   100802749   pumilio homolog 2 
 vvi-u.5   100243338   pumilio homolog 2 
 vvi-u.5   100265064   pumilio homolog 2 
 vvi-u.5   100242795   pumilio homolog 4 
 ppo-u.5   7494941   pumilio homolog 4 
 ppo-u.5   7468626   pumilio homolog 2 
 mtr-u.5   11427522   pumilio homolog 1 
 mtr-u.5   11417387   pumilio homolog 2 
 mtr-u.5   11416297   pumilio homolog 4 
 sly-u.5   101245368   pumilio homolog 2-like 
 sly-u.5   101246586   pumilio homolog 4-like 
 sly-u.5   101257175   pumilio homolog 2 
 sot-r.1   102604169   pumilio homolog 1-like 
 sot-r.1   102600224   pumilio homolog 1-like 
 sot-r.1   102600046   pumilio homolog 2-like 
 nta-r.1   107761860   pumilio homolog 1-like 
 nta-r.1   107828552   pumilio homolog 2-like 
 nta-r.1   107821428   pumilio homolog 2-like 
 osa-u.5   4337585   pumilio homolog 1 
 osa-u.5   4331160   pumilio homolog 1 
 osa-u.5   4327511   pumilio homolog 1 
 zma-u.5   103627898   pumilio homolog 1 
 zma-u.5   103654114   pumilio homolog 3 
 zma-u.5   100384506   Pumilio homolog 3 
 tae-r.2   123072823   pumilio homolog 1 
 tae-r.2   123080987   pumilio homolog 1 
 tae-r.2   123104094   pumilio homolog 2 
 hvu-r.1   123445685   pumilio homolog 1-like 
 hvu-r.1   123444911   pumilio homolog 1-like 
 hvu-r.1   123441025   pumilio homolog 1-like 
 sbi-r.1   8067314   pumilio homolog 1 
 sbi-r.1   8056456   pumilio homolog 1 
 sbi-r.1   8058896   pumilio homolog 2 
 bdi-r.1   100829594   pumilio homolog 2 
 bdi-r.1   100846732   pumilio homolog 3 
 bdi-r.1   100846906   pumilio homolog 1 
 cre-r.1   CHLRE_17g746647v5   uncharacterized protein 

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Top 50 coexpressed genes to PUM1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PUM1 (ath-u.5 coexpression data)

CoexMap"817469"


athPUM1 | Entrez gene ID : 817469      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 6 2 3 3 3 3 3 2 3 3 3 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005829 [list] [network] cytosol  (2593 genes)  RCA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_001324547.1 [sequence] [blastp]
NP_180483.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  plas 1,  vacu 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for NP_001324547.1)
nucl 7,  cyto 1,  plas 1,  vacu 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for NP_180483.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001324547.1)
other 8  (predict for NP_180483.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PUM1
ath-r.7
for
PUM1
ath-e.2
for
PUM1
ath-u.5
for
PUM3
ath-u.5
for
PUM2
ath-u.5
for
PUM4
bra-r.6
for
103859341
bra-r.6
for
103864952
bna-r.1
for
106446948
bna-r.1
for
106445423
bna-r.1
for
106439244
ghi-r.1
for
107950325
ghi-r.1
for
107943640
ghi-r.1
for
107942403
cit-r.1
for
102624631
cit-r.1
for
102625650
cit-r.1
for
102629221
gma-u.5
for
100818836
gma-u.5
for
100803806
gma-u.5
for
100802749
vvi-u.5
for
100243338
vvi-u.5
for
100265064
vvi-u.5
for
100242795
ppo-u.5
for
7494941
ppo-u.5
for
7468626
mtr-u.5
for
11427522
mtr-u.5
for
11417387
mtr-u.5
for
11416297
sly-u.5
for
101245368
sly-u.5
for
101246586
sly-u.5
for
101257175
sot-r.1
for
102604169
sot-r.1
for
102600224
sot-r.1
for
102600046
nta-r.1
for
107761860
nta-r.1
for
107828552
nta-r.1
for
107821428
osa-u.5
for
4337585
osa-u.5
for
4331160
osa-u.5
for
4327511
zma-u.5
for
103627898
zma-u.5
for
103654114
zma-u.5
for
100384506
tae-r.2
for
123072823
tae-r.2
for
123080987
tae-r.2
for
123104094
hvu-r.1
for
123445685
hvu-r.1
for
123444911
hvu-r.1
for
123441025
sbi-r.1
for
8067314
sbi-r.1
for
8056456
sbi-r.1
for
8058896
bdi-r.1
for
100829594
bdi-r.1
for
100846732
bdi-r.1
for
100846906
cre-r.1
for
CHLRE_17g746647v5


Ortholog ID: 950
Species ath ath ath bra bra bna bna bna ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol PUM1 PUM3 PUM2 LOC103859341 LOC103864952 LOC106446948 LOC106445423 LOC106439244 LOC107942403 LOC107906572 LOC107904273 LOC102624631 LOC102625650 LOC102629221 LOC100798281 LOC100787039 LOC100779564 LOC100243338 LOC100265064 LOC100242795 LOC7494941 LOC7468626 LOC7490383 LOC11427522 LOC11417387 LOC11415949 LOC101245368 LOC101246586 LOC101257175 LOC102600224 LOC102600046 LOC102587757 LOC107803666 LOC107793448 LOC107766528 LOC4337585 LOC4331160 LOC4327511 LOC103627898 LOC103654114 LOC100279770 LOC123080987 LOC123139891 LOC123062572 LOC123445685 LOC123444911 LOC123441025 LOC8067314 LOC8056456 LOC8058896 LOC100829594 LOC100846732 LOC100846906 CHLRE_17g746647v5
Function* pumilio 1 pumilio 3 pumilio 2 pumilio homolog 4 pumilio homolog 1 pumilio homolog 1 pumilio homolog 1 pumilio homolog 4 pumilio homolog 2 pumilio homolog 2 pumilio homolog 4 pumilio homolog 4 pumilio homolog 1-like pumilio homolog 2-like pumilio homolog 4 pumilio homolog 2 pumilio homolog 2 pumilio homolog 2 pumilio homolog 2 pumilio homolog 4 pumilio homolog 4 pumilio homolog 2 pumilio homolog 1 pumilio homolog 1 pumilio homolog 2 pumilio homolog 2 pumilio homolog 2-like pumilio homolog 4-like pumilio homolog 2 pumilio homolog 1-like pumilio homolog 2-like pumilio homolog 2-like pumilio homolog 1 pumilio homolog 4 pumilio homolog 2 pumilio homolog 1 pumilio homolog 1 pumilio homolog 1 pumilio homolog 1 pumilio homolog 3 uncharacterized LOC100279770 pumilio homolog 1 pumilio homolog 3 pumilio homolog 1 pumilio homolog 1-like pumilio homolog 1-like pumilio homolog 1-like pumilio homolog 1 pumilio homolog 1 pumilio homolog 2 pumilio homolog 2 pumilio homolog 3 pumilio homolog 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 3
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 10
bna04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 10
bna04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 6
bna03015 mRNA surveillance pathway 2
bna00514 Other types of O-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit00970 Aminoacyl-tRNA biosynthesis 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 3
gma03040 Spliceosome 2
gma00330 Arginine and proline metabolism 2
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00330 Arginine and proline metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 2
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 3
sly00010 Glycolysis / Gluconeogenesis 2
sly00030 Pentose phosphate pathway 2
sly00051 Fructose and mannose metabolism 2
sly00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04146 Peroxisome 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00514 Other types of O-glycan biosynthesis 2
nta03083 Polycomb repressive complex 2
nta04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 4
zma00562 Inositol phosphate metabolism 2
zma04070 Phosphatidylinositol signaling system 2
zma04145 Phagosome 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 4
zma04120 Ubiquitin mediated proteolysis 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03430 Mismatch repair 4
tae03460 Fanconi anemia pathway 4
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae00030 Pentose phosphate pathway 3
tae00480 Glutathione metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 5
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 3
sbi03430 Mismatch repair 2
sbi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 2
bdi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817469 817463 817468 103859341 103864952 106446948 106445423 106439244 107942403 107906572 107904273 102624631 102625650 102629221 100798281 100787039 100779564 100243338 100265064 100242795 7494941 7468626 7490383 11427522 11417387 11415949 101245368 101246586 101257175 102600224 102600046 102587757 107803666 107793448 107766528 4337585 4331160 4327511 103627898 103654114 100279770 123080987 123139891 123062572 123445685 123444911 123441025 8067314 8056456 8058896 100829594 100846732 100846906 5729128
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