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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CLPR4   CLP protease R subunit 4 
 ath-r.7   CLPR4   CLP protease R subunit 4 
 ath-m.9   CLPR4   CLP protease R subunit 4 
 ath-e.2   CLPR4   CLP protease R subunit 4 
 ath-m.4.bio   CLPR4   CLP protease R subunit 4 
 ath-m.4.hor   CLPR4   CLP protease R subunit 4 
 ath-m.4.lig   CLPR4   CLP protease R subunit 4 
 ath-m.4.str   CLPR4   CLP protease R subunit 4 
 ath-m.4.tis   CLPR4   CLP protease R subunit 4 
 gma-u.5   100785827   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like 
 gma-u.5   100780029   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 vvi-u.5   100855178   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 ppo-u.5   18096891   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 mtr-u.5   25493594   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 sly-u.5   101247052   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 osa-u.5   4325168   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 zma-u.5   100272400   uncharacterized LOC100272400 

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Top 50 coexpressed genes to CLPR4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CLPR4 (ath-u.5 coexpression data)

CoexMap"827412"


athCLPR4 | Entrez gene ID : 827412      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000302 [list] [network] response to reactive oxygen species  (142 genes)  IMP  
GO:0010468 [list] [network] regulation of gene expression  (2062 genes)  IMP  
GO CC
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA IDA  
GO:0009532 [list] [network] plastid stroma  (704 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
Protein NP_567521.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 5,  chlo_mito 5  (predict for NP_567521.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_567521.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CLPR4

.
ath-r.7
for
CLPR4

.
ath-m.9
for
CLPR4

.
ath-e.2
for
CLPR4

.
ath-m.4.bio
for
CLPR4

.
ath-m.4.hor
for
CLPR4

.
ath-m.4.lig
for
CLPR4

.
ath-m.4.str
for
CLPR4

.
ath-m.4.tis
for
CLPR4

.
gma-u.5
for
100785827

.
gma-u.5
for
100780029

.
vvi-u.5
for
100855178

.
ppo-u.5
for
18096891

.
mtr-u.5
for
25493594

.
sly-u.5
for
101247052

.
osa-u.5
for
4325168

.
zma-u.5
for
100272400

.


Ortholog ID: 7277
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol CLPR4 LOC100785827 LOC100780029 LOC101247052 LOC4325168 LOC100272400 LOC103868942 LOC103860891 LOC100855178 LOC18096891 LOC25493594 LOC123078165 LOC123061092 LOC123443508 LOC107950095 LOC107939884 LOC106440262 LOC106425454 CHLRE_03g204350v5 LOC8074526 LOC102591717 LOC102629735 LOC102627265 LOC100842227 LOC107790385 LOC107831804
Function* CLP protease R subunit 4 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic uncharacterized LOC100272400 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic uncharacterized protein ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00480 Glutathione metabolism 2
ath00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 5
gma00450 Selenocompound metabolism 4
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 3
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 2
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
vvi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00340 Histidine metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 4
bna03060 Protein export 2
bna00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 4
bna00230 Purine metabolism 2
bna00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 3
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
nta01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 3
nta00340 Histidine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827412 100785827 100780029 101247052 4325168 100272400 103868942 103860891 100855178 18096891 25493594 123078165 123061092 123443508 107950095 107939884 106440262 106425454 5718870 8074526 102591717 102629735 102627265 100842227 107790385 107831804
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