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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RGXT1   rhamnogalacturonan xylosyltransferase 1 
 ath-r.7   RGXT1   rhamnogalacturonan xylosyltransferase 1 
 ath-e.2   RGXT1   rhamnogalacturonan xylosyltransferase 1 
 ath-u.5   RGXT2   rhamnogalacturonan xylosyltransferase 2 
 ath-u.5   MGP4   Nucleotide-diphospho-sugar transferase family protein 
 ath-u.5   RGXT3   RhamnoGalacturonan specific Xylosyltransferase 1 
 bra-r.6   103862634   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3-like 
 bra-r.6   103836795   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 
 ghi-r.1   107900926   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 
 ghi-r.1   107887332   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 
 cit-r.1   127901184   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4-like 
 cit-r.1   102628491   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 
 gma-u.5   100775719   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 
 vvi-u.5   100249591   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 
 vvi-u.5   100244803   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 
 ppo-u.5   7457370   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 
 ppo-u.5   7492743   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 
 mtr-u.5   25493437   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 
 sly-u.5   101246090   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 
 sot-r.1   102591057   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 
 nta-r.1   107824067   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 
 nta-r.1   107800014   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4-like 
 osa-u.5   4338659   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 
 zma-u.5   100276040   UDP-D-xylose:L-fucose alpha-13-D-xylosyltransferase MGP4 
 tae-r.2   123054182   uncharacterized LOC123054182 
 tae-r.2   123130911   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 
 hvu-r.1   123448250   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4-like 
 hvu-r.1   123439866   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4-like 
 sbi-r.1   8077954   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 
 bdi-r.1   100839509   UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 

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Top 50 coexpressed genes to RGXT1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RGXT1 (ath-u.5 coexpression data)

CoexMap"828129"


athRGXT1 | Entrez gene ID : 828129      
Species ath bra ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre bna
Paralog 6 2 2 2 1 2 2 1 1 1 2 1 1 2 2 1 1 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010306 [list] [network] rhamnogalacturonan II biosynthetic process  (10 genes)  IMP  
GO CC
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0035252 [list] [network] UDP-xylosyltransferase activity  (9 genes)  IDA  
Protein NP_001328015.1 [sequence] [blastp]
NP_192086.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  pero 2,  nucl 1,  cyto_pero 1  (predict for NP_001328015.1)
chlo 6,  mito 2,  nucl 1,  plas 1,  E.R. 1,  nucl_plas 1,  E.R._plas 1  (predict for NP_192086.1)
Subcellular
localization
TargetP
other 6,  chlo 6  (predict for NP_001328015.1)
other 6,  chlo 6  (predict for NP_192086.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RGXT1
ath-r.7
for
RGXT1
ath-e.2
for
RGXT1
ath-u.5
for
RGXT2
ath-u.5
for
MGP4
ath-u.5
for
RGXT3
bra-r.6
for
103862634
bra-r.6
for
103836795
ghi-r.1
for
107900926
ghi-r.1
for
107887332
cit-r.1
for
127901184
cit-r.1
for
102628491
gma-u.5
for
100775719
vvi-u.5
for
100249591
vvi-u.5
for
100244803
ppo-u.5
for
7457370
ppo-u.5
for
7492743
mtr-u.5
for
25493437
sly-u.5
for
101246090
sot-r.1
for
102591057
nta-r.1
for
107824067
nta-r.1
for
107800014
osa-u.5
for
4338659
zma-u.5
for
100276040
tae-r.2
for
123054182
tae-r.2
for
123130911
hvu-r.1
for
123448250
hvu-r.1
for
123439866
sbi-r.1
for
8077954
bdi-r.1
for
100839509


Ortholog ID: 3481
Species ath ath ath bra bra bna ghi ghi cit cit gma vvi vvi ppo ppo mtr sly sot nta nta osa zma tae tae hvu hvu sbi bdi
Symbol RGXT2 MGP4 RGXT3 LOC103862634 LOC103836795 LOC106395443 LOC107900926 LOC107887332 LOC127901184 LOC102628491 LOC100775719 LOC100249591 LOC100244803 LOC7457370 LOC7492743 LOC25493437 LOC101246090 LOC102591057 LOC107824067 LOC107800014 LOC4338659 LOC100276040 LOC123054182 LOC123130911 LOC123448250 LOC123439866 LOC8077954 LOC100839509
Function* rhamnogalacturonan xylosyltransferase 2 Nucleotide-diphospho-sugar transferase family protein RhamnoGalacturonan specific Xylosyltransferase 1 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3-like UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3-like UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4-like UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4-like UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 UDP-D-xylose:L-fucose alpha-13-D-xylosyltransferase MGP4 uncharacterized LOC123054182 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4-like UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4-like UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00520 Amino sugar and nucleotide sugar metabolism 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
nta04142 Lysosome 2
nta04016 MAPK signaling pathway - plant 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 3
osa00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 2
tae03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827905 828028 842108 103862634 103836795 106395443 107900926 107887332 127901184 102628491 100775719 100249591 100244803 7457370 7492743 25493437 101246090 102591057 107824067 107800014 4338659 100276040 123054182 123130911 123448250 123439866 8077954 100839509
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