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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT4G30825   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-r.7   AT4G30825   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.9   AT4G30825   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-e.2   AT4G30825   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.bio   AT4G30825   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.hor   AT4G30825   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.lig   AT4G30825   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.str   AT4G30825   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.tis   AT4G30825   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100804693   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 vvi-u.5   100267412   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 ppo-u.5   7463649   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 mtr-u.5   11411682   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 sly-u.5   101248791   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 osa-u.5   4347096   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 zma-u.5   103641195   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 

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Top 50 coexpressed genes to AT4G30825 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G30825 (ath-u.5 coexpression data)

CoexMap"829206"


athAT4G30825 | Entrez gene ID : 829206      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  IDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_567856.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 4,  chlo 1,  cysk 1  (predict for NP_567856.1)
Subcellular
localization
TargetP
chlo 5  (predict for NP_567856.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT4G30825

.
ath-r.7
for
AT4G30825

.
ath-m.9
for
AT4G30825

.
ath-e.2
for
AT4G30825

.
ath-m.4.bio
for
AT4G30825

.
ath-m.4.hor
for
AT4G30825

.
ath-m.4.lig
for
AT4G30825

.
ath-m.4.str
for
AT4G30825

.
ath-m.4.tis
for
AT4G30825

.
gma-u.5
for
100804693

.
vvi-u.5
for
100267412

.
ppo-u.5
for
7463649

.
mtr-u.5
for
11411682

.
sly-u.5
for
101248791

.
osa-u.5
for
4347096

.
zma-u.5
for
103641195

.


Ortholog ID: 11380
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT4G30825 LOC100804693 LOC101248791 LOC4347096 LOC103641195 LOC103852325 LOC100267412 LOC7463649 LOC11411682 LOC123103840 LOC123112074 LOC123397979 LOC121204598 LOC107912320 LOC106375459 LOC106434443 LOC8057871 LOC102600654 LOC102620440 LOC100830141 LOC107783502 LOC107818682
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 4
zma03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 5
bdi00710 Carbon fixation by Calvin cycle 4
bdi01230 Biosynthesis of amino acids 4
bdi00030 Pentose phosphate pathway 3
bdi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829206 100804693 101248791 4347096 103641195 103852325 100267412 7463649 11411682 123103840 123112074 123397979 121204598 107912320 106375459 106434443 8057871 102600654 102620440 100830141 107783502 107818682
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