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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102620440   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 ath-u.5   AT4G30825   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103852325   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 ghi-r.1   107912320   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 ghi-r.1   121204598   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 bna-r.1   106434443   pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like 
 bna-r.1   106375459   pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like 
 gma-u.5   100804693   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 vvi-u.5   100267412   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 ppo-u.5   7463649   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 mtr-u.5   11411682   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 sly-u.5   101248791   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 sot-r.1   102600654   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 nta-r.1   107818682   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 nta-r.1   107783502   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 osa-u.5   4347096   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 zma-u.5   103641195   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 tae-r.2   123121606   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 tae-r.2   123112074   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 tae-r.2   123103840   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 hvu-r.1   123397979   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 sbi-r.1   8057871   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 bdi-r.1   100830141   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 

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Top 50 coexpressed genes to 102620440 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102620440 (cit-r.1 coexpression data)

CoexMap"102620440"


citLOC102620440 | Entrez gene ID : 102620440    
Species cit ath bra ghi bna gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 1 1 2 2 1 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_006474045.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  cyto 3,  nucl 2,  cyto_plas 2  (predict for XP_006474045.2)
Subcellular
localization
TargetP
chlo 6  (predict for XP_006474045.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102620440
ath-u.5
for
AT4G30825
bra-r.6
for
103852325
ghi-r.1
for
107912320
ghi-r.1
for
121204598
bna-r.1
for
106434443
bna-r.1
for
106375459
gma-u.5
for
100804693
vvi-u.5
for
100267412
ppo-u.5
for
7463649
mtr-u.5
for
11411682
sly-u.5
for
101248791
sot-r.1
for
102600654
nta-r.1
for
107818682
nta-r.1
for
107783502
osa-u.5
for
4347096
zma-u.5
for
103641195
tae-r.2
for
123121606
tae-r.2
for
123112074
tae-r.2
for
123103840
hvu-r.1
for
123397979
sbi-r.1
for
8057871
bdi-r.1
for
100830141


Ortholog ID: 11380
Species cit ath bra ghi ghi bna bna gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC102620440 AT4G30825 LOC103852325 LOC107912320 LOC121204598 LOC106434443 LOC106375459 LOC100804693 LOC100267412 LOC7463649 LOC11411682 LOC101248791 LOC102600654 LOC107818682 LOC107783502 LOC4347096 LOC103641195 LOC123121606 LOC123112074 LOC123103840 LOC123397979 LOC8057871 LOC100830141
Function* pentatricopeptide repeat-containing protein At4g30825, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic pentatricopeptide repeat-containing protein At4g30825, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 4
zma03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 4
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 5
bdi00710 Carbon fixation by Calvin cycle 4
bdi01230 Biosynthesis of amino acids 4
bdi00030 Pentose phosphate pathway 3
bdi00010 Glycolysis / Gluconeogenesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102620440 829206 103852325 107912320 121204598 106434443 106375459 100804693 100267412 7463649 11411682 101248791 102600654 107818682 107783502 4347096 103641195 123121606 123112074 123103840 123397979 8057871 100830141
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