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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT4G38890   FMN-linked oxidoreductases superfamily protein 
 ath-r.7   AT4G38890   FMN-linked oxidoreductases superfamily protein 
 ath-m.9   AT4G38890   FMN-linked oxidoreductases superfamily protein 
 ath-e.2   AT4G38890   FMN-linked oxidoreductases superfamily protein 
 ath-m.4.bio   AT4G38890   FMN-linked oxidoreductases superfamily protein 
 ath-m.4.hor   AT4G38890   FMN-linked oxidoreductases superfamily protein 
 ath-m.4.lig   AT4G38890   FMN-linked oxidoreductases superfamily protein 
 ath-m.4.str   AT4G38890   FMN-linked oxidoreductases superfamily protein 
 ath-m.4.tis   AT4G38890   FMN-linked oxidoreductases superfamily protein 
 gma-u.5   100783494   tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 
 vvi-u.5   100262408   tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 
 ppo-u.5   7494292   tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 
 mtr-u.5   11418223   tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 
 sly-u.5   101268622   tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 
 osa-u.5   4334955   tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 
 zma-u.5   100279244   uncharacterized LOC100279244 

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Top 50 coexpressed genes to AT4G38890 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G38890 (ath-u.5 coexpression data)

CoexMap"830044"


athAT4G38890 | Entrez gene ID : 830044      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005773 [list] [network] vacuole  (984 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  RCA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_195600.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_195600.2)
Subcellular
localization
TargetP
other 8  (predict for NP_195600.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT4G38890

.
ath-r.7
for
AT4G38890

.
ath-m.9
for
AT4G38890

.
ath-e.2
for
AT4G38890

.
ath-m.4.bio
for
AT4G38890

.
ath-m.4.hor
for
AT4G38890

.
ath-m.4.lig
for
AT4G38890

.
ath-m.4.str
for
AT4G38890

.
ath-m.4.tis
for
AT4G38890

.
gma-u.5
for
100783494

.
vvi-u.5
for
100262408

.
ppo-u.5
for
7494292

.
mtr-u.5
for
11418223

.
sly-u.5
for
101268622

.
osa-u.5
for
4334955

.
zma-u.5
for
100279244

.


Ortholog ID: 10910
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT4G38890 LOC100783494 LOC101268622 LOC4334955 LOC100279244 LOC103860413 LOC100262408 LOC7494292 LOC11418223 LOC123043074 LOC123050965 LOC123431472 LOC107920288 LOC107903715 LOC106438752 LOC106434003 CHLRE_04g229948v5 LOC8080272 LOC102598558 LOC102621230 LOC100840789 LOC107782150 LOC107766363
Function* FMN-linked oxidoreductases superfamily protein tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like uncharacterized LOC100279244 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like uncharacterized protein tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 3
gma00250 Alanine, aspartate and glutamate metabolism 2
gma01240 Biosynthesis of cofactors 2
gma00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 3
tae00020 Citrate cycle (TCA cycle) 3
tae00620 Pyruvate metabolism 3
tae00785 Lipoic acid metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00230 Purine metabolism 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00230 Purine metabolism 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 7
sbi03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot04141 Protein processing in endoplasmic reticulum 3
sot03008 Ribosome biogenesis in eukaryotes 2
sot03022 Basal transcription factors 2
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 5
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830044 100783494 101268622 4334955 100279244 103860413 100262408 7494292 11418223 123043074 123050965 123431472 107920288 107903715 106438752 106434003 5717942 8080272 102598558 102621230 100840789 107782150 107766363
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