ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT4G38890	FMN-linked oxidoreductases superfamily protein
ath-r.7	AT4G38890	FMN-linked oxidoreductases superfamily protein
ath-m.9	AT4G38890	FMN-linked oxidoreductases superfamily protein
ath-e.2	AT4G38890	FMN-linked oxidoreductases superfamily protein
ath-m.4.bio	AT4G38890	FMN-linked oxidoreductases superfamily protein
ath-m.4.hor	AT4G38890	FMN-linked oxidoreductases superfamily protein
ath-m.4.lig	AT4G38890	FMN-linked oxidoreductases superfamily protein
ath-m.4.str	AT4G38890	FMN-linked oxidoreductases superfamily protein
ath-m.4.tis	AT4G38890	FMN-linked oxidoreductases superfamily protein
gma-u.5	100783494	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
vvi-u.5	100262408	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
ppo-u.5	7494292	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
mtr-u.5	11418223	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
sly-u.5	101268622	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
osa-u.5	4334955	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
zma-u.5	100279244	uncharacterized LOC100279244

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005773 [list] [network] vacuole	(984 genes)	HDA
GO:0005829 [list] [network] cytosol	(2593 genes)	RCA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

Protein

NP_195600.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for NP_195600.2)

Subcellular
localization
TargetP

other 8

(predict for NP_195600.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT4G38890	ath-r.7 for AT4G38890	ath-m.9 for AT4G38890	ath-e.2 for AT4G38890	ath-m.4.bio for AT4G38890	ath-m.4.hor for AT4G38890	ath-m.4.lig for AT4G38890	ath-m.4.str for AT4G38890	ath-m.4.tis for AT4G38890	gma-u.5 for 100783494	vvi-u.5 for 100262408	ppo-u.5 for 7494292	mtr-u.5 for 11418223	sly-u.5 for 101268622	osa-u.5 for 4334955	zma-u.5 for 100279244

Ortholog

Ortholog ID: 10910

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

FMN-linked oxidoreductases superfamily protein

tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like

uncharacterized LOC100279244

tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ghi01240	Biosynthesis of cofactors	2
ghi00230	Purine metabolism	2
ghi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ghi01240	Biosynthesis of cofactors	2
ghi00230	Purine metabolism	2
ghi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	3
gma00250	Alanine, aspartate and glutamate metabolism	2
gma01240	Biosynthesis of cofactors	2
gma00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	3
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot04141	Protein processing in endoplasmic reticulum	3
sot03008	Ribosome biogenesis in eukaryotes	2
sot03022	Basal transcription factors	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00970	Aminoacyl-tRNA biosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	4
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00010	Glycolysis / Gluconeogenesis	3
tae00020	Citrate cycle (TCA cycle)	3
tae00620	Pyruvate metabolism	3
tae00785	Lipoic acid metabolism	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00970	Aminoacyl-tRNA biosynthesis	7
sbi03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00970	Aminoacyl-tRNA biosynthesis	5
bdi03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

830044

103860413

106438752

106434003

107920288

107903715

102621230

100783494

100262408

7494292

11418223

101268622

102598558

107782150

107766363

4334955

100279244

123043074

123050965

123431472

8080272

100840789

5717942

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT4G38890 (ath-u.5 coexpression data)

Top 50 enrichment test to AT4G38890 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	9	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT4G38890 (ath-u.5 coexpression data)

Top 50 enrichment test to AT4G38890 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**