ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT5G49530	SIN-like family protein
ath-r.7	AT5G49530	SIN-like family protein
ath-m.9	AT5G49530	SIN-like family protein
ath-e.2	AT5G49530	SIN-like family protein
ath-m.4.bio	AT5G49530	SIN-like family protein
ath-m.4.hor	AT5G49530	SIN-like family protein
ath-m.4.lig	AT5G49530	SIN-like family protein
ath-m.4.str	AT5G49530	SIN-like family protein
ath-m.4.tis	AT5G49530	SIN-like family protein
bra-r.6	103874616	DNA-directed RNA polymerase III subunit RPC5
bna-r.1	106348801	DNA-directed RNA polymerase III subunit RPC5
ghi-r.1	107913706	DNA-directed RNA polymerase III subunit RPC5
ghi-r.1	107913093	DNA-directed RNA polymerase III subunit RPC5
ghi-r.1	107896374	DNA-directed RNA polymerase III subunit RPC5
cit-r.1	102618000	uncharacterized LOC102618000
gma-u.5	100780965	DNA-directed RNA polymerase III subunit RPC5
vvi-u.5	100247859	uncharacterized LOC100247859
ppo-u.5	7478022	uncharacterized LOC7478022
mtr-u.5	11409562	DNA-directed RNA polymerase III subunit RPC5
sly-u.5	101252245	uncharacterized LOC101252245
sly-u.5	101256904	uncharacterized LOC101256904
sot-r.1	102585686	DNA-directed RNA polymerase III subunit RPC5-like
sot-r.1	102594031	DNA-directed RNA polymerase III subunit RPC5-like
sot-r.1	102595101	uncharacterized LOC102595101
nta-r.1	107790452	uncharacterized LOC107790452
nta-r.1	107829383	uncharacterized LOC107829383
nta-r.1	107827193	uncharacterized LOC107827193
osa-u.5	9268125	uncharacterized LOC9268125
zma-u.5	103653271	uncharacterized LOC103653271
zma-u.5	103629388	uncharacterized LOC103629388
tae-r.2	123147886	uncharacterized LOC123147886
hvu-r.1	123407460	uncharacterized LOC123407460
hvu-r.1	123440346	uncharacterized LOC123440346
sbi-r.1	8076259	uncharacterized LOC8076259
bdi-r.1	100836051	uncharacterized LOC100836051
cre-r.1	CHLRE_10g454650v5	uncharacterized protein

Annotation

functional annotation

KEGG

ath03020 [list] [network] RNA polymerase (52 genes)

GO BP

GO:0006351 [list] [network] DNA-templated transcription

(160 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_199764.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto 1, plas 1, cyto_plas 1

(predict for NP_199764.1)

Subcellular
localization
TargetP

other 9

(predict for NP_199764.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT5G49530	ath-r.7 for AT5G49530	ath-m.9 for AT5G49530	ath-e.2 for AT5G49530	ath-m.4.bio for AT5G49530	ath-m.4.hor for AT5G49530	ath-m.4.lig for AT5G49530	ath-m.4.str for AT5G49530	ath-m.4.tis for AT5G49530	bra-r.6 for 103874616	bna-r.1 for 106348801	ghi-r.1 for 107913706	ghi-r.1 for 107913093	ghi-r.1 for 107896374	cit-r.1 for 102618000	gma-u.5 for 100780965	vvi-u.5 for 100247859	ppo-u.5 for 7478022	mtr-u.5 for 11409562	sly-u.5 for 101252245	sly-u.5 for 101256904	sot-r.1 for 102585686	sot-r.1 for 102594031	sot-r.1 for 102595101	nta-r.1 for 107790452	nta-r.1 for 107829383	nta-r.1 for 107827193	osa-u.5 for 9268125	zma-u.5 for 103653271	zma-u.5 for 103629388	tae-r.2 for 123147886	hvu-r.1 for 123407460	hvu-r.1 for 123440346	sbi-r.1 for 8076259	bdi-r.1 for 100836051	cre-r.1 for CHLRE_10g454650v5

Ortholog

Ortholog ID: 5391

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

SIN-like family protein

DNA-directed RNA polymerase III subunit RPC5

uncharacterized LOC102618000

DNA-directed RNA polymerase III subunit RPC5

uncharacterized LOC100247859

uncharacterized LOC7478022

DNA-directed RNA polymerase III subunit RPC5

uncharacterized LOC101252245

uncharacterized LOC101256904

DNA-directed RNA polymerase III subunit RPC5-like

uncharacterized LOC102595101

uncharacterized LOC107790452

uncharacterized LOC107829383

uncharacterized LOC107807280

uncharacterized LOC9268125

uncharacterized LOC103653271

uncharacterized LOC103629388

uncharacterized LOC123147886

uncharacterized LOC123165063

uncharacterized LOC123407460

uncharacterized LOC123440346

uncharacterized LOC8076259

uncharacterized LOC100836051

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	5
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	4
bra00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	3
ghi00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	3
ghi00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03020	RNA polymerase	2
ppo03008	Ribosome biogenesis in eukaryotes	2
ppo03018	RNA degradation	2
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	5
mtr03020	RNA polymerase	3
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03020	RNA polymerase	4
sly03008	Ribosome biogenesis in eukaryotes	4
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03020	RNA polymerase	4
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03020	RNA polymerase	5
sot03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	5
nta03008	Ribosome biogenesis in eukaryotes	3
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	5
nta03008	Ribosome biogenesis in eukaryotes	3
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	5
nta03008	Ribosome biogenesis in eukaryotes	4
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	7
zma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03020	RNA polymerase	2
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03020	RNA polymerase	2
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2
sbi03083	Polycomb repressive complex	2
sbi03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

835014

103874616

106348801

107913706

107913093

107896374

102618000

100780965

100247859

7478022

11409562

101252245

101256904

102585686

102594031

102595101

107790452

107829383

107807280

9268125

103653271

103629388

123147886

123165063

123407460

123440346

8076259

100836051

66055104

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT5G49530 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G49530 (ath-u.5 coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	1	1	3	1	1	1	1	1	2	3	3	1	2	1	2	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G49530 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G49530 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**