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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   BAM4   beta-amylase 4 
 ath-r.7   BAM4   beta-amylase 4 
 ath-m.9   BAM4   beta-amylase 4 
 ath-e.2   BAM4   beta-amylase 4 
 ath-m.4.bio   BAM4   beta-amylase 4 
 ath-m.4.hor   BAM4   beta-amylase 4 
 ath-m.4.lig   BAM4   beta-amylase 4 
 ath-m.4.str   BAM4   beta-amylase 4 
 ath-m.4.tis   BAM4   beta-amylase 4 
 bra-r.6   103851866   inactive beta-amylase 4, chloroplastic 
 bra-r.6   103856969   inactive beta-amylase 4, chloroplastic 
 bna-r.1   106380881   inactive beta-amylase 4, chloroplastic 
 bna-r.1   106387399   inactive beta-amylase 4, chloroplastic 
 bna-r.1   106389748   inactive beta-amylase 4, chloroplastic 
 ghi-r.1   107920614   inactive beta-amylase 4, chloroplastic 
 ghi-r.1   107926329   inactive beta-amylase 4, chloroplastic 
 vvi-u.5   100254897   inactive beta-amylase 4, chloroplastic 

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Top 50 coexpressed genes to BAM4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to BAM4 (ath-u.5 coexpression data)

CoexMap"835664"


athBAM4 | Entrez gene ID : 835664      
Species ath bra bna ghi vvi cre ppo hvu mtr nta tae bdi osa gma zma sly cit sot sbi
Paralog 9 2 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0005983 [list] [network] starch catabolic process  (17 genes)  IMP  
GO CC
GO:0005576 [list] [network] extracellular region  (3158 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA  
GO MF
GO:0016161 [list] [network] beta-amylase activity  (7 genes)  IDA IEA  
Protein NP_001318804.1 [sequence] [blastp]
NP_568829.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  E.R._plas 3,  plas 2,  E.R. 2,  mito 1,  extr 1  (predict for NP_001318804.1)
nucl 5,  chlo 4  (predict for NP_568829.2)
Subcellular
localization
TargetP
scret 9  (predict for NP_001318804.1)
other 5  (predict for NP_568829.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
BAM4
ath-r.7
for
BAM4
ath-m.9
for
BAM4
ath-e.2
for
BAM4
ath-m.4.bio
for
BAM4
ath-m.4.hor
for
BAM4
ath-m.4.lig
for
BAM4
ath-m.4.str
for
BAM4
ath-m.4.tis
for
BAM4
bra-r.6
for
103851866
bra-r.6
for
103856969
bna-r.1
for
106380881
bna-r.1
for
106387399
bna-r.1
for
106389748
ghi-r.1
for
107920614
ghi-r.1
for
107926329
vvi-u.5
for
100254897


Ortholog ID: 15229
Species ath bra bra bna bna bna ghi ghi vvi
Symbol BAM4 LOC103851866 LOC103856969 LOC106380881 LOC106387399 LOC125575096 LOC107920614 LOC107926329 LOC100254897
Function* beta-amylase 4 inactive beta-amylase 4, chloroplastic inactive beta-amylase 4, chloroplastic inactive beta-amylase 4, chloroplastic inactive beta-amylase 4, chloroplastic inactive beta-amylase 4, chloroplastic-like inactive beta-amylase 4, chloroplastic inactive beta-amylase 4, chloroplastic inactive beta-amylase 4, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00564 Glycerophospholipid metabolism 3
bra00592 alpha-Linolenic acid metabolism 3
bra00100 Steroid biosynthesis 2
bra00561 Glycerolipid metabolism 2
bra00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835664 103851866 103856969 106380881 106387399 125575096 107920614 107926329 100254897
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