ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	emb1692	Ubiquitin carboxyl-terminal hydrolase family protein
ath-r.7	emb1692	Ubiquitin carboxyl-terminal hydrolase family protein
ath-m.9	emb1692	Ubiquitin carboxyl-terminal hydrolase family protein
ath-e.2	emb1692	Ubiquitin carboxyl-terminal hydrolase family protein
ath-m.4.bio	emb1692	Ubiquitin carboxyl-terminal hydrolase family protein
ath-m.4.hor	emb1692	Ubiquitin carboxyl-terminal hydrolase family protein
ath-m.4.lig	emb1692	Ubiquitin carboxyl-terminal hydrolase family protein
ath-m.4.str	emb1692	Ubiquitin carboxyl-terminal hydrolase family protein
ath-m.4.tis	emb1692	Ubiquitin carboxyl-terminal hydrolase family protein
bra-r.6	103837441	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
bna-r.1	106366175	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
bna-r.1	106400689	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
ghi-r.1	107934814	protein WHAT'S THIS FACTOR 1, chloroplastic
ghi-r.1	107927448	protein WHAT'S THIS FACTOR 1, chloroplastic
cit-r.1	102628498	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
gma-u.5	102665449	protein WHAT'S THIS FACTOR 1, chloroplastic
vvi-u.5	100266927	protein WHAT'S THIS FACTOR 1, chloroplastic
ppo-u.5	7466191	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
mtr-u.5	25489668	protein WHAT'S THIS FACTOR 1, chloroplastic
sly-u.5	101251230	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
sot-r.1	102586006	protein ROOT PRIMORDIUM DEFECTIVE 1
nta-r.1	107829266	protein WHAT'S THIS FACTOR 1, chloroplastic-like
nta-r.1	107801438	protein WHAT'S THIS FACTOR 1, chloroplastic-like
osa-u.5	4335458	protein WHAT'S THIS FACTOR 1, chloroplastic
zma-u.5	103625789	protein WHAT'S THIS FACTOR 1, chloroplastic
tae-r.2	123119343	protein WHAT'S THIS FACTOR 1, chloroplastic
tae-r.2	123110312	protein WHAT'S THIS FACTOR 1, chloroplastic
tae-r.2	123101180	protein WHAT'S THIS FACTOR 1, chloroplastic
hvu-r.1	123396215	protein WHAT'S THIS FACTOR 1, chloroplastic-like
sbi-r.1	8057098	protein ROOT PRIMORDIUM DEFECTIVE 1
bdi-r.1	100842188	protein WHAT'S THIS FACTOR 1

Annotation

functional annotation

KEGG

GO BP

GO:0009793 [list] [network] embryo development ending in seed dormancy

(569 genes)

NAS

GO CC

GO:0005681 [list] [network] spliceosomal complex	(19 genes)	IDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	IDA
GO:0005634 [list] [network] nucleus	(10367 genes)	IDA ISM

GO MF

GO:0003723 [list] [network] RNA binding

(1764 genes)

IDA

Protein

NP_201104.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, nucl 2, plas 2, nucl_plas 2

(predict for NP_201104.1)

Subcellular
localization
TargetP

chlo 6

(predict for NP_201104.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for emb1692	ath-r.7 for emb1692	ath-m.9 for emb1692	ath-e.2 for emb1692	ath-m.4.bio for emb1692	ath-m.4.hor for emb1692	ath-m.4.lig for emb1692	ath-m.4.str for emb1692	ath-m.4.tis for emb1692	bra-r.6 for 103837441	bna-r.1 for 106366175	bna-r.1 for 106400689	ghi-r.1 for 107934814	ghi-r.1 for 107927448	cit-r.1 for 102628498	gma-u.5 for 102665449	vvi-u.5 for 100266927	ppo-u.5 for 7466191	mtr-u.5 for 25489668	sly-u.5 for 101251230	sot-r.1 for 102586006	nta-r.1 for 107829266	nta-r.1 for 107801438	osa-u.5 for 4335458	zma-u.5 for 103625789	tae-r.2 for 123119343	tae-r.2 for 123110312	tae-r.2 for 123101180	hvu-r.1 for 123396215	sbi-r.1 for 8057098	bdi-r.1 for 100842188