ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	MAF5	K-box region/MADS-box transcription factor family protein
ath-r.7	MAF5	K-box region/MADS-box transcription factor family protein
ath-m.9	MAF5	K-box region/MADS-box transcription factor family protein
ath-e.2	MAF5	K-box region/MADS-box transcription factor family protein
ath-m.4.bio	MAF5	K-box region/MADS-box transcription factor family protein
ath-m.4.hor	MAF5	K-box region/MADS-box transcription factor family protein
ath-m.4.lig	MAF5	K-box region/MADS-box transcription factor family protein
ath-m.4.str	MAF5	K-box region/MADS-box transcription factor family protein
ath-m.4.tis	MAF5	K-box region/MADS-box transcription factor family protein
ath-u.5	AGL31	AGAMOUS-like 31
ath-u.5	MAF3	K-box region and MADS-box transcription factor family protein
bra-r.6	103850339	MADS-box protein FLOWERING LOCUS C
bra-r.6	103855272	agamous-like MADS-box protein AGL27
bra-r.6	103855273	protein MADS AFFECTING FLOWERING 5
bna-r.1	106382847	agamous-like MADS-box protein AGL27
bna-r.1	106382850	agamous-like MADS-box protein AGL27
cit-r.1	102618544	agamous-like MADS-box protein MADS2
gma-u.5	100804540	MADS-box protein FLOWERING LOCUS C
gma-u.5	AGL3L	agamous-like MADS-box protein AGL3-like
vvi-u.5	100241171	MADS-box transcription factor 18
vvi-u.5	FLC	flowering locus C
ppo-u.5	7456243	truncated transcription factor CAULIFLOWER A
ppo-u.5	7460555	MADS-box protein EJ2
ppo-u.5	18097112	MADS-box transcription factor 14
sly-u.5	101250404	agamous-like MADS-box protein AGL27
sly-u.5	101247413	MADS-box transcription factor
sly-u.5	MBP15	MADS-box transcription factor MBP15
sot-r.1	102605812	truncated transcription factor CAULIFLOWER A-like
sot-r.1	102605245	protein MADS AFFECTING FLOWERING 5-like
sot-r.1	102593535	agamous-like MADS-box protein AGL27
nta-r.1	107761984	agamous-like MADS-box protein AGL27
nta-r.1	107830078	agamous-like MADS-box protein AGL27
nta-r.1	107824723	agamous-like MADS-box protein AGL27

Annotation

functional annotation

KEGG

GO BP

GO:0048587 [list] [network] regulation of short-day photoperiodism, flowering	(15 genes)	IGI
GO:0010048 [list] [network] vernalization response	(18 genes)	IEP
GO:0009910 [list] [network] negative regulation of flower development	(50 genes)	IMP
GO:2000028 [list] [network] regulation of photoperiodism, flowering	(101 genes)	IGI

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity

(1620 genes)

ISS

Protein

NP_001078799.2 [sequence] [blastp]
NP_001318879.1 [sequence] [blastp]
NP_001330487.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 2, cyto_nucl 2, chlo 2, golg_plas 2, cyto 1, plas 1, golg 1	(predict for NP_001078799.2)
nucl 4, cyto 2, extr 2, cysk_nucl 2	(predict for NP_001318879.1)
nucl 4, chlo 2, cysk_nucl 2, golg_plas 1, plas 1, golg 1	(predict for NP_001330487.1)

Subcellular
localization
TargetP

other 4, chlo 3, mito 3	(predict for NP_001078799.2)
other 9	(predict for NP_001318879.1)
other 4, chlo 3, mito 3	(predict for NP_001330487.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for MAF5	ath-r.7 for MAF5	ath-m.9 for MAF5	ath-e.2 for MAF5	ath-m.4.bio for MAF5	ath-m.4.hor for MAF5	ath-m.4.lig for MAF5	ath-m.4.str for MAF5	ath-m.4.tis for MAF5	ath-u.5 for AGL31	ath-u.5 for MAF3	bra-r.6 for 103850339	bra-r.6 for 103855272	bra-r.6 for 103855273	bna-r.1 for 106382847	bna-r.1 for 106382850	cit-r.1 for 102618544	gma-u.5 for 100804540	gma-u.5 for AGL3L	vvi-u.5 for 100241171	vvi-u.5 for FLC	ppo-u.5 for 7456243	ppo-u.5 for 7460555	ppo-u.5 for 18097112	sly-u.5 for 101250404	sly-u.5 for 101247413	sly-u.5 for MBP15	sot-r.1 for 102605812	sot-r.1 for 102605245	sot-r.1 for 102593535	nta-r.1 for 107761984	nta-r.1 for 107830078	nta-r.1 for 107824723