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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100804540   MADS-box protein FLOWERING LOCUS C 
 gma-r.7   100804540   MADS-box protein FLOWERING LOCUS C 
 gma-m.5   100804540   MADS-box protein FLOWERING LOCUS C 
 gma-u.5   AGL3L   agamous-like MADS-box protein AGL3-like 
 ppo-u.5   7460555   MADS-box protein EJ2 
 ppo-u.5   7456243   truncated transcription factor CAULIFLOWER A 
 ppo-u.5   18097112   MADS-box transcription factor 14 
 ath-u.5   AGL31   AGAMOUS-like 31 
 ath-u.5   MAF3   K-box region and MADS-box transcription factor family protein 
 vvi-u.5   100241171   MADS-box transcription factor 18 
 vvi-u.5   FLC   flowering locus C 
 sly-u.5   101250404   agamous-like MADS-box protein AGL27 
 sly-u.5   101247413   MADS-box transcription factor 
 sly-u.5   MBP15   MADS-box transcription factor MBP15 

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Top 50 coexpressed genes to 100804540 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100804540 (gma-u.5 coexpression data)

CoexMap"100804540"


gmaLOC100804540 | Entrez gene ID : 100804540      
Species gma ppo ath vvi sly hvu mtr osa sot tae nta bra cit ghi zma bna bdi sbi cre
Paralog 4 3 2 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (294 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (449 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (557 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (899 genes)  IEA  
Protein XP_003524905.1 [sequence] [blastp]
XP_006580127.1 [sequence] [blastp]
XP_006580128.1 [sequence] [blastp]
XP_006580130.1 [sequence] [blastp]
XP_014631160.1 [sequence] [blastp]
XP_040871462.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 4,  extr 1,  pero 1  (predict for XP_003524905.1)
nucl 4,  cyto 4,  mito 1,  pero 1,  cysk 1  (predict for XP_006580127.1)
nucl 6,  cyto 2,  mito 1  (predict for XP_006580128.1)
nucl 5,  cyto 3,  mito 1,  extr 1,  pero 1  (predict for XP_006580130.1)
cyto 5,  nucl 4  (predict for XP_014631160.1)
cyto 4,  golg 3,  cyto_nucl 3  (predict for XP_040871462.1)
Subcellular
localization
TargetP
other 8  (predict for XP_003524905.1)
other 8  (predict for XP_006580127.1)
other 8  (predict for XP_006580128.1)
other 8  (predict for XP_006580130.1)
other 8  (predict for XP_014631160.1)
other 8  (predict for XP_040871462.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100804540

.
gma-r.7
for
100804540

.
gma-m.5
for
100804540

.
gma-u.5
for
AGL3L

.
ppo-u.5
for
7460555

.
ppo-u.5
for
7456243

.
ppo-u.5
for
18097112

.
ath-u.5
for
AGL31

.
ath-u.5
for
MAF3

.
vvi-u.5
for
100241171

.
vvi-u.5
for
FLC

.
sly-u.5
for
101250404

.
sly-u.5
for
101247413

.
sly-u.5
for
MBP15

.


Ortholog ID: 2843
Species ath ath gma gma sly sly bra bra vvi vvi ppo ppo bna sot cit nta nta
Symbol MAF1 AGL31 AGL3L LOC100804540 LOC101250404 MBP15 LOC103850339 LOC103857284 LOC100241171 FLC LOC7460555 LOC18097112 LOC106382850 LOC102605245 LOC102618544 LOC107804949 LOC107830078
Function* K-box region and MADS-box transcription factor family protein AGAMOUS-like 31 agamous-like MADS-box protein AGL3-like MADS-box protein FLOWERING LOCUS C agamous-like MADS-box protein AGL27 MADS-box transcription factor MBP15 MADS-box protein FLOWERING LOCUS C MADS-box protein FLOWERING LOCUS C MADS-box transcription factor 18 flowering locus C MADS-box protein EJ2 MADS-box transcription factor 14 agamous-like MADS-box protein AGL27 protein MADS AFFECTING FLOWERING 5-like agamous-like MADS-box protein MADS2 agamous-like MADS-box protein AGL27 agamous-like MADS-box protein AGL27
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 3
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 8
sot00195 Photosynthesis 6
sot03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844042 836629 100778392 100804540 101250404 101247115 103850339 103857284 100241171 100267653 7460555 18097112 106382850 102605245 102618544 107804949 107830078
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