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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G11860   Glycine cleavage T-protein family 
 ath-r.7   AT1G11860   Glycine cleavage T-protein family 
 ath-m.9   AT1G11860   Glycine cleavage T-protein family 
 ath-e.2   AT1G11860   Glycine cleavage T-protein family 
 ath-m.4.bio   AT1G11860   Glycine cleavage T-protein family 
 ath-m.4.hor   AT1G11860   Glycine cleavage T-protein family 
 ath-m.4.lig   AT1G11860   Glycine cleavage T-protein family 
 ath-m.4.str   AT1G11860   Glycine cleavage T-protein family 
 ath-m.4.tis   AT1G11860   Glycine cleavage T-protein family 
 gma-u.5   100809241   aminomethyltransferase, mitochondrial 
 gma-u.5   100804288   aminomethyltransferase, mitochondrial 
 gma-u.5   100800509   aminomethyltransferase, mitochondrial 
 vvi-u.5   100250401   aminomethyltransferase, mitochondrial 
 ppo-u.5   18111215   aminomethyltransferase, mitochondrial 
 ppo-u.5   18097363   aminomethyltransferase, mitochondrial 
 mtr-u.5   11437303   aminomethyltransferase, mitochondrial 
 sly-u.5   101249137   aminomethyltransferase, mitochondrial 
 osa-u.5   4337051   aminomethyltransferase, mitochondrial 
 zma-u.5   100279332   uncharacterized LOC100279332 

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Top 50 coexpressed genes to AT1G11860 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G11860 (ath-u.5 coexpression data)

CoexMap"837733"


athAT1G11860 | Entrez gene ID : 837733      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 3 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00260 [list] [network] Glycine, serine and threonine metabolism (70 genes)
ath00630 [list] [network] Glyoxylate and dicarboxylate metabolism (81 genes)
ath00670 [list] [network] One carbon pool by folate (42 genes)
ath00785 [list] [network] Lipoic acid metabolism (36 genes)
ath01200 [list] [network] Carbon metabolism (275 genes)
GO BP
GO:0006546 [list] [network] glycine catabolic process  (5 genes)  IEA  
GO CC
GO:0022626 [list] [network] cytosolic ribosome  (295 genes)  HDA  
GO:0048046 [list] [network] apoplast  (340 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA IDA ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA  
GO MF
GO:0004047 [list] [network] aminomethyltransferase activity  (1 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_001318983.1 [sequence] [blastp]
NP_172650.1 [sequence] [blastp]
NP_849646.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 2  (predict for NP_001318983.1)
chlo 4,  mito 4,  chlo_mito 4  (predict for NP_172650.1)
chlo 4,  mito 4,  chlo_mito 4  (predict for NP_849646.1)
Subcellular
localization
TargetP
mito 9  (predict for NP_001318983.1)
mito 8  (predict for NP_172650.1)
mito 8  (predict for NP_849646.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G11860

.
ath-r.7
for
AT1G11860

.
ath-m.9
for
AT1G11860

.
ath-e.2
for
AT1G11860

.
ath-m.4.bio
for
AT1G11860

.
ath-m.4.hor
for
AT1G11860

.
ath-m.4.lig
for
AT1G11860

.
ath-m.4.str
for
AT1G11860

.
ath-m.4.tis
for
AT1G11860

.
gma-u.5
for
100809241

.
gma-u.5
for
100804288

.
gma-u.5
for
100800509

.
vvi-u.5
for
100250401

.
ppo-u.5
for
18111215

.
ppo-u.5
for
18097363

.
mtr-u.5
for
11437303

.
sly-u.5
for
101249137

.
osa-u.5
for
4337051

.
zma-u.5
for
100279332

.


Ortholog ID: 6697
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G11860 LOC100809241 LOC100804288 LOC101249137 LOC4337051 LOC100279332 LOC103836204 LOC103843220 LOC100250401 LOC18097363 LOC18111215 LOC11437303 LOC123054633 LOC123046778 LOC123427785 LOC107958283 LOC107905916 LOC106415143 LOC106413869 CHLRE_03g193750v5 LOC8066805 LOC102602939 LOC102624724 LOC100824957 LOC107805971 LOC107783755
Function* Glycine cleavage T-protein family aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial uncharacterized LOC100279332 aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial uncharacterized protein aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial-like aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial aminomethyltransferase, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 10
ath00630 Glyoxylate and dicarboxylate metabolism 6
ath00260 Glycine, serine and threonine metabolism 5
ath00670 One carbon pool by folate 5
ath00710 Carbon fixation by Calvin cycle 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 4
gma00260 Glycine, serine and threonine metabolism 3
gma00630 Glyoxylate and dicarboxylate metabolism 3
gma00670 One carbon pool by folate 3
gma00785 Lipoic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00260 Glycine, serine and threonine metabolism 4
gma00630 Glyoxylate and dicarboxylate metabolism 4
gma00670 One carbon pool by folate 4
gma00785 Lipoic acid metabolism 4
gma01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00630 Glyoxylate and dicarboxylate metabolism 7
sly01200 Carbon metabolism 7
sly00260 Glycine, serine and threonine metabolism 3
sly00710 Carbon fixation by Calvin cycle 3
sly01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 8
osa00630 Glyoxylate and dicarboxylate metabolism 6
osa01230 Biosynthesis of amino acids 5
osa00260 Glycine, serine and threonine metabolism 5
osa00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 7
zma01200 Carbon metabolism 7
zma00630 Glyoxylate and dicarboxylate metabolism 5
zma00710 Carbon fixation by Calvin cycle 4
zma00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 9
bra01230 Biosynthesis of amino acids 7
bra00630 Glyoxylate and dicarboxylate metabolism 6
bra00010 Glycolysis / Gluconeogenesis 5
bra00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 8
bra01230 Biosynthesis of amino acids 6
bra00630 Glyoxylate and dicarboxylate metabolism 5
bra00785 Lipoic acid metabolism 4
bra00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 5
vvi00710 Carbon fixation by Calvin cycle 4
vvi00195 Photosynthesis 3
vvi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00670 One carbon pool by folate 10
ppo01230 Biosynthesis of amino acids 8
ppo00270 Cysteine and methionine metabolism 7
ppo01200 Carbon metabolism 6
ppo01240 Biosynthesis of cofactors 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 10
ppo00710 Carbon fixation by Calvin cycle 8
ppo01230 Biosynthesis of amino acids 7
ppo00030 Pentose phosphate pathway 4
ppo00630 Glyoxylate and dicarboxylate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 6
mtr00630 Glyoxylate and dicarboxylate metabolism 4
mtr00710 Carbon fixation by Calvin cycle 3
mtr01230 Biosynthesis of amino acids 3
mtr00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 7
tae00260 Glycine, serine and threonine metabolism 4
tae00670 One carbon pool by folate 4
tae00785 Lipoic acid metabolism 4
tae01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 4
tae00260 Glycine, serine and threonine metabolism 3
tae00670 One carbon pool by folate 3
tae00785 Lipoic acid metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 10
hvu00710 Carbon fixation by Calvin cycle 6
hvu00630 Glyoxylate and dicarboxylate metabolism 6
hvu00195 Photosynthesis 3
hvu00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 4
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi00670 One carbon pool by folate 4
ghi00785 Lipoic acid metabolism 4
ghi01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 4
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi00670 One carbon pool by folate 4
ghi00785 Lipoic acid metabolism 4
ghi01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 4
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna00670 One carbon pool by folate 4
bna00785 Lipoic acid metabolism 4
bna01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 4
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna00670 One carbon pool by folate 4
bna00785 Lipoic acid metabolism 4
bna01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00260 Glycine, serine and threonine metabolism 5
cre00630 Glyoxylate and dicarboxylate metabolism 5
cre01200 Carbon metabolism 5
cre00670 One carbon pool by folate 3
cre01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 6
sbi01230 Biosynthesis of amino acids 5
sbi00030 Pentose phosphate pathway 4
sbi00710 Carbon fixation by Calvin cycle 3
sbi00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 9
sot00710 Carbon fixation by Calvin cycle 8
sot01230 Biosynthesis of amino acids 7
sot00010 Glycolysis / Gluconeogenesis 3
sot00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 4
cit01230 Biosynthesis of amino acids 3
cit03010 Ribosome 3
cit00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 5
bdi00195 Photosynthesis 4
bdi00710 Carbon fixation by Calvin cycle 3
bdi00190 Oxidative phosphorylation 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 12
nta01200 Carbon metabolism 10
nta00260 Glycine, serine and threonine metabolism 8
nta00710 Carbon fixation by Calvin cycle 6
nta00220 Arginine biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 12
nta01200 Carbon metabolism 10
nta00260 Glycine, serine and threonine metabolism 8
nta00710 Carbon fixation by Calvin cycle 6
nta00220 Arginine biosynthesis 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837733 100809241 100804288 101249137 4337051 100279332 103836204 103843220 100250401 18097363 18111215 11437303 123054633 123046778 123427785 107958283 107905916 106415143 106413869 5718707 8066805 102602939 102624724 100824957 107805971 107783755
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