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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PUB54   plant U-box 54 
 ath-r.7   PUB54   plant U-box 54 
 ath-e.2   PUB54   plant U-box 54 
 ath-u.5   AT1G01670   RING/U-box superfamily protein 
 bra-r.6   103844670   U-box domain-containing protein 54 
 bra-r.6   103844669   U-box domain-containing protein 56 
 bna-r.1   125584346   U-box domain-containing protein 54-like 
 bna-r.1   111202347   U-box domain-containing protein 54-like 
 cre-r.1   CHLRE_08g383550v5   uncharacterized protein 

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Top 50 coexpressed genes to PUB54 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PUB54 (ath-u.5 coexpression data)

CoexMap"839251"


athPUB54 | Entrez gene ID : 839251      
Species ath bra bna cre vvi ppo mtr hvu nta tae bdi osa gma zma cit sly ghi sot sbi
Paralog 4 2 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  IEA  
Protein NP_171674.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 3,  nucl_plas 3  (predict for NP_171674.2)
Subcellular
localization
TargetP
other 8  (predict for NP_171674.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PUB54
ath-r.7
for
PUB54
ath-e.2
for
PUB54
ath-u.5
for
AT1G01670
bra-r.6
for
103844670
bra-r.6
for
103844669
bna-r.1
for
125584346
bna-r.1
for
111202347
cre-r.1
for
CHLRE_08g383550v5


Ortholog ID: 12956
Species ath ath bra bra bna bna bna cre
Symbol PUB54 AT1G01670 LOC103844670 LOC103844669 LOC111202347 LOC106370859 LOC106370857 CHLRE_08g383550v5
Function* plant U-box 54 RING/U-box superfamily protein U-box domain-containing protein 54 U-box domain-containing protein 56 U-box domain-containing protein 54-like U-box domain-containing protein 56-like U-box domain-containing protein 54 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03060 Protein export 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839251 839365 103844670 103844669 111202347 106370859 106370857 5719821
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