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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   ATXRCC1   BRCT domain-containing DNA repair protein 
 ath-r.7   ATXRCC1   BRCT domain-containing DNA repair protein 
 ath-m.9   ATXRCC1   BRCT domain-containing DNA repair protein 
 ath-e.2   ATXRCC1   BRCT domain-containing DNA repair protein 
 ath-m.4.bio   ATXRCC1   BRCT domain-containing DNA repair protein 
 ath-m.4.hor   ATXRCC1   BRCT domain-containing DNA repair protein 
 ath-m.4.lig   ATXRCC1   BRCT domain-containing DNA repair protein 
 ath-m.4.str   ATXRCC1   BRCT domain-containing DNA repair protein 
 ath-m.4.tis   ATXRCC1   BRCT domain-containing DNA repair protein 
 gma-u.5   100818448   uncharacterized LOC100818448 
 gma-u.5   100780160   DNA-repair protein XRCC1 
 vvi-u.5   100266851   DNA-repair protein XRCC1 
 ppo-u.5   7490987   DNA-repair protein XRCC1 
 mtr-u.5   11442049   DNA-repair protein XRCC1 
 sly-u.5   101246064   DNA-repair protein XRCC1 
 osa-u.5   4340098   DNA-repair protein XRCC1 
 zma-u.5   100283527   uncharacterized LOC100283527 

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Top 50 coexpressed genes to ATXRCC1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ATXRCC1 (ath-u.5 coexpression data)

CoexMap"844382"


athATXRCC1 | Entrez gene ID : 844382      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03410 [list] [network] Base excision repair (50 genes)
GO BP
GO:0000012 [list] [network] single strand break repair  (2 genes)  IEA  
GO:0006303 [list] [network] double-strand break repair via nonhomologous end joining  (9 genes)  IMP  
GO:0006284 [list] [network] base-excision repair  (21 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0010385 [list] [network] double-stranded methylated DNA binding  (9 genes)  IDA  
GO:0003684 [list] [network] damaged DNA binding  (10 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001077856.1 [sequence] [blastp]
NP_001185449.1 [sequence] [blastp]
NP_001321272.1 [sequence] [blastp]
NP_178158.2 [sequence] [blastp]
NP_850985.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1,  cysk 1,  golg_plas 1  (predict for NP_001077856.1)
nucl 8,  cyto 1,  cysk 1,  golg_plas 1  (predict for NP_001185449.1)
nucl 8,  cyto 1,  cysk 1,  golg_plas 1  (predict for NP_001321272.1)
nucl 8,  cyto 1,  cysk 1,  golg_plas 1  (predict for NP_178158.2)
nucl 8,  cyto 1,  cysk 1,  golg_plas 1  (predict for NP_850985.1)
Subcellular
localization
TargetP
chlo 6  (predict for NP_001077856.1)
chlo 6  (predict for NP_001185449.1)
chlo 6  (predict for NP_001321272.1)
chlo 6  (predict for NP_178158.2)
chlo 6  (predict for NP_850985.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
ATXRCC1

.
ath-r.7
for
ATXRCC1

.
ath-m.9
for
ATXRCC1

.
ath-e.2
for
ATXRCC1

.
ath-m.4.bio
for
ATXRCC1

.
ath-m.4.hor
for
ATXRCC1

.
ath-m.4.lig
for
ATXRCC1

.
ath-m.4.str
for
ATXRCC1

.
ath-m.4.tis
for
ATXRCC1

.
gma-u.5
for
100818448

.
gma-u.5
for
100780160

.
vvi-u.5
for
100266851

.
ppo-u.5
for
7490987

.
mtr-u.5
for
11442049

.
sly-u.5
for
101246064

.
osa-u.5
for
4340098

.
zma-u.5
for
100283527

.


Ortholog ID: 9891
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol ATXRCC1 LOC100818448 LOC100780160 LOC101246064 LOC4340098 LOC100283527 LOC103853256 LOC100266851 LOC7490987 LOC11442049 LOC123151422 LOC123087989 LOC123409672 LOC107949576 LOC107951899 LOC106398475 LOC125581658 LOC8070726 LOC102582898 LOC102609129 LOC100823945 LOC107799418 LOC107783037
Function* BRCT domain-containing DNA repair protein uncharacterized LOC100818448 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 uncharacterized LOC100283527 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1-like DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1-like DNA-repair protein XRCC1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03410 Base excision repair 2
gma04144 Endocytosis 2
gma04517 IgSF CAM signaling 2
gma05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03410 Base excision repair 2
osa03060 Protein export 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
ppo03420 Nucleotide excision repair 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03410 Base excision repair 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00010 Glycolysis / Gluconeogenesis 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00010 Glycolysis / Gluconeogenesis 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 3
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00510 N-Glycan biosynthesis 4
bna00513 Various types of N-glycan biosynthesis 4
bna03015 mRNA surveillance pathway 4
bna04136 Autophagy - other 4
bna04382 Cornified envelope formation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 3
nta03018 RNA degradation 2
nta04144 Endocytosis 2
nta04814 Motor proteins 2
nta00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844382 100818448 100780160 101246064 4340098 100283527 103853256 100266851 7490987 11442049 123151422 123087989 123409672 107949576 107951899 106398475 125581658 8070726 102582898 102609129 100823945 107799418 107783037
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