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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107949576   DNA-repair protein XRCC1 
 ghi-r.1   107951899   DNA-repair protein XRCC1 
 ath-u.5   ATXRCC1   BRCT domain-containing DNA repair protein 
 bra-r.6   103853256   DNA-repair protein XRCC1 
 bna-r.1   125581658   DNA-repair protein XRCC1-like 
 bna-r.1   106398475   DNA-repair protein XRCC1 
 bna-r.1   125586126   DNA-repair protein XRCC1-like 
 cit-r.1   102609129   DNA-repair protein XRCC1 
 gma-u.5   100818448   uncharacterized LOC100818448 
 gma-u.5   100780160   DNA-repair protein XRCC1 
 vvi-u.5   100266851   DNA-repair protein XRCC1 
 ppo-u.5   7490987   DNA-repair protein XRCC1 
 mtr-u.5   11442049   DNA-repair protein XRCC1 
 sly-u.5   101246064   DNA-repair protein XRCC1 
 sot-r.1   102582898   DNA-repair protein XRCC1 
 nta-r.1   107799418   DNA-repair protein XRCC1-like 
 nta-r.1   107783037   DNA-repair protein XRCC1 
 osa-u.5   4340098   DNA-repair protein XRCC1 
 zma-u.5   100283527   uncharacterized LOC100283527 
 tae-r.2   123166924   DNA-repair protein XRCC1 
 tae-r.2   123087989   DNA-repair protein XRCC1 
 hvu-r.1   123409672   DNA-repair protein XRCC1 
 sbi-r.1   8070726   DNA-repair protein XRCC1 
 bdi-r.1   100823945   DNA-repair protein XRCC1 

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Top 50 coexpressed genes to 107949576 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107949576 (ghi-r.1 coexpression data)

CoexMap"107949576"


ghiLOC107949576 | Entrez gene ID : 107949576    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 3 1 2 1 1 1 1 1 2 1 1 2 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03410 [list] [network] Base excision repair (108 genes)
GO BP
GO:0000012 [list] [network] single strand break repair  (4 genes)  IEA  
GO:0006303 [list] [network] double-strand break repair via nonhomologous end joining  (23 genes)  IEA  
GO:0006284 [list] [network] base-excision repair  (63 genes)  IEA  
GO CC
GO MF
GO:0003684 [list] [network] damaged DNA binding  (72 genes)  IEA  
Protein XP_016739765.2 [sequence] [blastp]
XP_016739766.2 [sequence] [blastp]
XP_016739767.2 [sequence] [blastp]
XP_016739768.1 [sequence] [blastp]
XP_016739769.1 [sequence] [blastp]
XP_016739770.2 [sequence] [blastp]
XP_040945750.1 [sequence] [blastp]
XP_040945751.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_016739765.2)
nucl 9  (predict for XP_016739766.2)
nucl 9  (predict for XP_016739767.2)
nucl 8,  plas 1,  golg_plas 1  (predict for XP_016739768.1)
nucl 9,  mito 1,  golg_plas 1  (predict for XP_016739769.1)
nucl 9,  plas 1,  golg_plas 1  (predict for XP_016739770.2)
nucl 9  (predict for XP_040945750.1)
nucl 9,  mito 1,  golg_plas 1  (predict for XP_040945751.1)
Subcellular
localization
TargetP
chlo 6,  other 3  (predict for XP_016739765.2)
chlo 6,  other 3  (predict for XP_016739766.2)
chlo 6,  other 3  (predict for XP_016739767.2)
chlo 6,  other 3  (predict for XP_016739768.1)
chlo 6,  other 3  (predict for XP_016739769.1)
chlo 6,  other 3  (predict for XP_016739770.2)
chlo 6,  other 3  (predict for XP_040945750.1)
chlo 6,  other 3  (predict for XP_040945751.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107949576
ghi-r.1
for
107951899
ath-u.5
for
ATXRCC1
bra-r.6
for
103853256
bna-r.1
for
125581658
bna-r.1
for
106398475
bna-r.1
for
125586126
cit-r.1
for
102609129
gma-u.5
for
100818448
gma-u.5
for
100780160
vvi-u.5
for
100266851
ppo-u.5
for
7490987
mtr-u.5
for
11442049
sly-u.5
for
101246064
sot-r.1
for
102582898
nta-r.1
for
107799418
nta-r.1
for
107783037
osa-u.5
for
4340098
zma-u.5
for
100283527
tae-r.2
for
123166924
tae-r.2
for
123087989
hvu-r.1
for
123409672
sbi-r.1
for
8070726
bdi-r.1
for
100823945


Ortholog ID: 9891
Species ghi ghi ath bra bna bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC107949576 LOC107951899 ATXRCC1 LOC103853256 LOC125581658 LOC106398475 LOC125586126 LOC102609129 LOC100818448 LOC100780160 LOC100266851 LOC7490987 LOC11442049 LOC101246064 LOC102582898 LOC107799418 LOC107783037 LOC4340098 LOC100283527 LOC123087989 LOC123151422 LOC123409672 LOC8070726 LOC100823945
Function* DNA-repair protein XRCC1 DNA-repair protein XRCC1 BRCT domain-containing DNA repair protein DNA-repair protein XRCC1 DNA-repair protein XRCC1-like DNA-repair protein XRCC1 DNA-repair protein XRCC1-like DNA-repair protein XRCC1 uncharacterized LOC100818448 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1-like DNA-repair protein XRCC1 DNA-repair protein XRCC1 uncharacterized LOC100283527 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 3
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00510 N-Glycan biosynthesis 4
bna00513 Various types of N-glycan biosynthesis 4
bna03015 mRNA surveillance pathway 4
bna04136 Autophagy - other 4
bna04382 Cornified envelope formation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03410 Base excision repair 2
gma04144 Endocytosis 2
gma04517 IgSF CAM signaling 2
gma05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
ppo03420 Nucleotide excision repair 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03410 Base excision repair 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 3
nta03018 RNA degradation 2
nta04144 Endocytosis 2
nta04814 Motor proteins 2
nta00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03410 Base excision repair 2
osa03060 Protein export 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00010 Glycolysis / Gluconeogenesis 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00010 Glycolysis / Gluconeogenesis 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107949576 107951899 844382 103853256 125581658 106398475 125586126 102609129 100818448 100780160 100266851 7490987 11442049 101246064 102582898 107799418 107783037 4340098 100283527 123087989 123151422 123409672 8070726 100823945
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