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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107951899   DNA-repair protein XRCC1 
 ath-u.5   ATXRCC1   BRCT domain-containing DNA repair protein 
 gma-u.5   100818448   uncharacterized LOC100818448 
 gma-u.5   100780160   DNA-repair protein XRCC1 
 vvi-u.5   100266851   DNA-repair protein XRCC1 
 ppo-u.5   7490987   DNA-repair protein XRCC1 
 mtr-u.5   11442049   DNA-repair protein XRCC1 
 sly-u.5   101246064   DNA-repair protein XRCC1 
 osa-u.5   4340098   DNA-repair protein XRCC1 
 zma-u.5   100283527   uncharacterized LOC100283527 

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Top 50 coexpressed genes to 107951899 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107951899 (ghi-r.1 coexpression data)

CoexMap"107951899"


ghiLOC107951899 | Entrez gene ID : 107951899    
Species ghi ath gma vvi ppo mtr sly osa zma hvu bna cit bra sbi bdi nta tae cre sot
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03410 [list] [network] Base excision repair (108 genes)
GO BP
GO:0000012 [list] [network] single strand break repair  (4 genes)  IEA  
GO:0006303 [list] [network] double-strand break repair via nonhomologous end joining  (23 genes)  IEA  
GO:0006284 [list] [network] base-excision repair  (63 genes)  IEA  
GO CC
GO MF
GO:0003684 [list] [network] damaged DNA binding  (72 genes)  IEA  
Protein XP_016742559.1 [sequence] [blastp]
XP_016742560.1 [sequence] [blastp]
XP_016742563.1 [sequence] [blastp]
XP_016742564.1 [sequence] [blastp]
XP_016742565.1 [sequence] [blastp]
XP_016742566.1 [sequence] [blastp]
XP_016742567.1 [sequence] [blastp]
XP_016742568.1 [sequence] [blastp]
XP_016742569.1 [sequence] [blastp]
XP_016742570.1 [sequence] [blastp]
XP_040942347.1 [sequence] [blastp]
XP_040942358.1 [sequence] [blastp]
XP_040942362.1 [sequence] [blastp]
XP_040942366.1 [sequence] [blastp]
XP_040942369.1 [sequence] [blastp]
XP_040942371.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_016742559.1)
nucl 9  (predict for XP_016742560.1)
nucl 9  (predict for XP_016742563.1)
nucl 9  (predict for XP_016742564.1)
nucl 9  (predict for XP_016742565.1)
nucl 9  (predict for XP_016742566.1)
nucl 9  (predict for XP_016742567.1)
nucl 9  (predict for XP_016742568.1)
nucl 9  (predict for XP_016742569.1)
nucl 9  (predict for XP_016742570.1)
nucl 9  (predict for XP_040942347.1)
nucl 9  (predict for XP_040942358.1)
nucl 9  (predict for XP_040942362.1)
nucl 9  (predict for XP_040942366.1)
nucl 9  (predict for XP_040942369.1)
nucl 9  (predict for XP_040942371.1)
Subcellular
localization
TargetP
chlo 6,  other 3  (predict for XP_016742559.1)
chlo 6,  other 3  (predict for XP_016742560.1)
chlo 6,  other 3  (predict for XP_016742563.1)
chlo 6,  other 3  (predict for XP_016742564.1)
chlo 6,  other 3  (predict for XP_016742565.1)
chlo 6,  other 3  (predict for XP_016742566.1)
chlo 6,  other 3  (predict for XP_016742567.1)
chlo 6,  other 3  (predict for XP_016742568.1)
chlo 6,  other 3  (predict for XP_016742569.1)
chlo 6,  other 3  (predict for XP_016742570.1)
chlo 6,  other 3  (predict for XP_040942347.1)
chlo 6,  other 3  (predict for XP_040942358.1)
chlo 6,  other 3  (predict for XP_040942362.1)
chlo 6,  other 3  (predict for XP_040942366.1)
chlo 6,  other 3  (predict for XP_040942369.1)
chlo 6,  other 3  (predict for XP_040942371.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107951899
ath-u.5
for
ATXRCC1
gma-u.5
for
100818448
gma-u.5
for
100780160
vvi-u.5
for
100266851
ppo-u.5
for
7490987
mtr-u.5
for
11442049
sly-u.5
for
101246064
osa-u.5
for
4340098
zma-u.5
for
100283527


Ortholog ID: 9891
Species ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC107949576 LOC107951899 ATXRCC1 LOC103853256 LOC106398475 LOC125581658 LOC102609129 LOC100818448 LOC100780160 LOC100266851 LOC7490987 LOC11442049 LOC101246064 LOC102582898 LOC107799418 LOC107783037 LOC4340098 LOC100283527 LOC123151422 LOC123087989 LOC123409672 LOC8070726 LOC100823945
Function* DNA-repair protein XRCC1 DNA-repair protein XRCC1 BRCT domain-containing DNA repair protein DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1-like DNA-repair protein XRCC1 uncharacterized LOC100818448 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1-like DNA-repair protein XRCC1 DNA-repair protein XRCC1 uncharacterized LOC100283527 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1 DNA-repair protein XRCC1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 3
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00510 N-Glycan biosynthesis 4
bna00513 Various types of N-glycan biosynthesis 4
bna03015 mRNA surveillance pathway 4
bna04136 Autophagy - other 4
bna04382 Cornified envelope formation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03410 Base excision repair 2
gma04144 Endocytosis 2
gma04517 IgSF CAM signaling 2
gma05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
ppo03420 Nucleotide excision repair 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03410 Base excision repair 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 3
nta03018 RNA degradation 2
nta04144 Endocytosis 2
nta04814 Motor proteins 2
nta00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03410 Base excision repair 2
osa03060 Protein export 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00010 Glycolysis / Gluconeogenesis 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00010 Glycolysis / Gluconeogenesis 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107949576 107951899 844382 103853256 106398475 125581658 102609129 100818448 100780160 100266851 7490987 11442049 101246064 102582898 107799418 107783037 4340098 100283527 123151422 123087989 123409672 8070726 100823945
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