ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-r.7	100788357	elongation factor 2
gma-u.5	100788357	elongation factor 2
gma-u.5	100804251	elongation factor 2
gma-u.5	100790826	elongation factor 2
mtr-u.5	25483153	elongation factor 2
mtr-u.5	11408360	elongation factor 2
mtr-u.5	11406801	elongation factor 2
ppo-u.5	7492112	elongation factor 2
ppo-u.5	7483076	elongation factor 2
ppo-u.5	7483077	elongation factor 2
ath-u.5	FH3	formin 3
ath-u.5	AT4G17100	poly(U)-specific endoribonuclease-B protein
bra-r.6	103854706	elongation factor 2
bra-r.6	103835225	elongation factor 2
vvi-u.5	100261253	elongation factor 2
ghi-r.1	107948434	elongation factor 2
ghi-r.1	107912934	elongation factor 2
ghi-r.1	107962309	elongation factor 2
bna-r.1	106382668	elongation factor 2-like
bna-r.1	106391434	elongation factor 2-like
bna-r.1	106366951	elongation factor 2-like
cit-r.1	102616295	elongation factor 2-like
cit-r.1	102616841	elongation factor 2
sly-u.5	101254320	elongation factor 2
sot-r.1	102596567	elongation factor 2
sot-r.1	102589228	elongation factor 2-like
sot-r.1	102595666	elongation factor 2-like
nta-r.1	107805110	elongation factor 2
nta-r.1	107779219	elongation factor 2-like
nta-r.1	107770769	elongation factor 2
osa-u.5	4334959	elongation factor 2
osa-u.5	4324669	elongation factor 2
osa-u.5	4329493	elongation factor 2
zma-u.5	100285098	uncharacterized LOC100285098
zma-u.5	103644298	elongation factor 2
zma-u.5	103644301	elongation factor 2
tae-r.2	123070221	elongation factor 2
tae-r.2	123078663	elongation factor 2
tae-r.2	123165591	elongation factor 2
hvu-r.1	123453183	elongation factor 2-like
hvu-r.1	123443968	elongation factor 2-like
hvu-r.1	123439759	elongation factor 2-like
sbi-r.1	8075554	elongation factor 2
sbi-r.1	110433471	elongation factor 2
sbi-r.1	110436195	elongation factor 2
bdi-r.1	106865398	elongation factor 2
bdi-r.1	100828009	elongation factor 2
bdi-r.1	100836272	elongation factor 2
cre-r.1	CHLRE_12g516200v5	uncharacterized protein

Top 50 coexpressed genes to 100788357 (gma-r.7 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100788357 (gma-r.7 coexpression data)

CoexMap"100788357"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006414 [list] [network] translational elongation

(65 genes)

IEA

GO CC

GO:1990904 [list] [network] ribonucleoprotein complex	(997 genes)	IEA
GO:0005829 [list] [network] cytosol	(1702 genes)	IEA

GO MF

GO:0003746 [list] [network] translation elongation factor activity	(46 genes)	IEA
GO:0043022 [list] [network] ribosome binding	(85 genes)	IEA
GO:0003924 [list] [network] GTPase activity	(363 genes)	IEA
GO:0005525 [list] [network] GTP binding	(408 genes)	IEA

Protein

XP_003546795.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 2, nucl 2

(predict for XP_003546795.1)

Subcellular
localization
TargetP

other 8, mito 3

(predict for XP_003546795.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-r.7 for 100788357	gma-u.5 for 100788357	gma-u.5 for 100804251	gma-u.5 for 100790826	mtr-u.5 for 25483153	mtr-u.5 for 11408360	mtr-u.5 for 11406801	ppo-u.5 for 7492112	ppo-u.5 for 7483076	ppo-u.5 for 7483077	ath-u.5 for FH3	ath-u.5 for AT4G17100	bra-r.6 for 103854706	bra-r.6 for 103835225	vvi-u.5 for 100261253	ghi-r.1 for 107948434	ghi-r.1 for 107912934	ghi-r.1 for 107962309	bna-r.1 for 106382668	bna-r.1 for 106391434	bna-r.1 for 106366951	cit-r.1 for 102616295	cit-r.1 for 102616841	sly-u.5 for 101254320	sot-r.1 for 102596567	sot-r.1 for 102589228	sot-r.1 for 102595666	nta-r.1 for 107805110	nta-r.1 for 107779219	nta-r.1 for 107770769	osa-u.5 for 4334959	osa-u.5 for 4324669	osa-u.5 for 4329493	zma-u.5 for 100285098	zma-u.5 for 103644298	zma-u.5 for 103644301	tae-r.2 for 123070221	tae-r.2 for 123078663	tae-r.2 for 123165591	hvu-r.1 for 123453183	hvu-r.1 for 123443968	hvu-r.1 for 123439759	sbi-r.1 for 8075554	sbi-r.1 for 110433471	sbi-r.1 for 110436195	bdi-r.1 for 106865398	bdi-r.1 for 100828009	bdi-r.1 for 100836272	cre-r.1 for CHLRE_12g516200v5

Ortholog

Ortholog ID: 1180

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

FH3

LOS1

NRPD4

Function^*

elongation factor 2

formin 3

Ribosomal protein S5/Elongation factor G/III/V family protein

RNA polymerase II, Rpb4, core protein

elongation factor 2

elongation factor 2-like

elongation factor 2

elongation factor 2-like

elongation factor 2

elongation factor 2-like

elongation factor 2

elongation factor 2-like

elongation factor 2

putative translation elongation factor family protein

elongation factor 2

elongation factor 2-like

elongation factor 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	2
gma00270	Cysteine and methionine metabolism	2
gma00450	Selenocompound metabolism	2
gma01230	Biosynthesis of amino acids	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	3
gma00450	Selenocompound metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00591	Linoleic acid metabolism	4
gma00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	3
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00480	Glutathione metabolism	2
mtr00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	8
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	7
ppo03013	Nucleocytoplasmic transport	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	7
ppo03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	4
ath03013	Nucleocytoplasmic transport	4
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00740	Riboflavin metabolism	2
ath01240	Biosynthesis of cofactors	2
ath04145	Phagosome	2
ath04148	Efferocytosis	2
ath04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3
bra00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00970	Aminoacyl-tRNA biosynthesis	4
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5
vvi03013	Nucleocytoplasmic transport	4
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00970	Aminoacyl-tRNA biosynthesis	8
ghi00300	Lysine biosynthesis	3
ghi00470	D-Amino acid metabolism	3
ghi01230	Biosynthesis of amino acids	3
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00970	Aminoacyl-tRNA biosynthesis	6
ghi01230	Biosynthesis of amino acids	6
ghi00300	Lysine biosynthesis	4
ghi00470	D-Amino acid metabolism	3
ghi00290	Valine, leucine and isoleucine biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00970	Aminoacyl-tRNA biosynthesis	6
ghi01230	Biosynthesis of amino acids	5
ghi00300	Lysine biosynthesis	3
ghi03013	Nucleocytoplasmic transport	2
ghi00470	D-Amino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna00220	Arginine biosynthesis	2
bna00240	Pyrimidine metabolism	2
bna00250	Alanine, aspartate and glutamate metabolism	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00970	Aminoacyl-tRNA biosynthesis	3
bna00220	Arginine biosynthesis	2
bna00240	Pyrimidine metabolism	2
bna00250	Alanine, aspartate and glutamate metabolism	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00220	Arginine biosynthesis	2
bna00240	Pyrimidine metabolism	2
bna00250	Alanine, aspartate and glutamate metabolism	2
bna01240	Biosynthesis of cofactors	2
bna00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	8
cit03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	3
cit03010	Ribosome	3
cit00190	Oxidative phosphorylation	2
cit00290	Valine, leucine and isoleucine biosynthesis	2
cit00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	6
sly03013	Nucleocytoplasmic transport	4
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00970	Aminoacyl-tRNA biosynthesis	3
sot00230	Purine metabolism	2
sot00250	Alanine, aspartate and glutamate metabolism	2
sot01232	Nucleotide metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	3
sot00970	Aminoacyl-tRNA biosynthesis	2
sot00230	Purine metabolism	2
sot00250	Alanine, aspartate and glutamate metabolism	2
sot01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00970	Aminoacyl-tRNA biosynthesis	3
sot00230	Purine metabolism	2
sot00250	Alanine, aspartate and glutamate metabolism	2
sot01232	Nucleotide metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	3
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	5
osa00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	3
osa04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	3
osa03010	Ribosome	2
osa00260	Glycine, serine and threonine metabolism	2
osa00270	Cysteine and methionine metabolism	2
osa01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2
zma03018	RNA degradation	2
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	7
zma03015	mRNA surveillance pathway	2
zma03018	RNA degradation	2
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2
zma03018	RNA degradation	2
zma00970	Aminoacyl-tRNA biosynthesis	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	6
tae00240	Pyrimidine metabolism	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	5
hvu03013	Nucleocytoplasmic transport	3
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00970	Aminoacyl-tRNA biosynthesis	4
sbi01240	Biosynthesis of cofactors	3
sbi00860	Porphyrin metabolism	2
sbi03013	Nucleocytoplasmic transport	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	3
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	3
bdi04144	Endocytosis	3
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00970	Aminoacyl-tRNA biosynthesis	2
cre00260	Glycine, serine and threonine metabolism	2
cre00270	Cysteine and methionine metabolism	2
cre01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

100788357

100804251

100790826

25483153

11406801

11415386

7492112

7483076

7483077

827184

842058

827277

103854706

103835225

100261253

107948434

121213757

107903816

106382668

106418012

125580902

102616295

102616841

101254320

102589228

102595666

102596007

107779219

107770769

107770162

4334959

4324669

4329493

103644298

103644301

100272648

123070221

123078663

123149064

123443968

123439759

123408103

8075554

110436195

100828009

100836272

100827163

5728754

The preparation time of this page was 0.1 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	2	2	1	3	3	2	1	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100788357 (gma-r.7 coexpression data)

Top 50 enrichment test to 100788357 (gma-r.7 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**