ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100799461	probable CCR4-associated factor 1 homolog 7
gma-r.7	100799461	probable CCR4-associated factor 1 homolog 7
gma-u.5	100798365	probable CCR4-associated factor 1 homolog 7
gma-u.5	100789409	probable CCR4-associated factor 1 homolog 7
gma-u.5	100785970	probable CCR4-associated factor 1 homolog 7
mtr-u.5	112420417	probable CCR4-associated factor 1 homolog 7
mtr-u.5	112421400	probable CCR4-associated factor 1 homolog 7
ppo-u.5	7493220	probable CCR4-associated factor 1 homolog 6
ppo-u.5	7458412	probable CCR4-associated factor 1 homolog 6
ppo-u.5	7455670	probable CCR4-associated factor 1 homolog 7
ath-u.5	AT2G32070	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
ath-u.5	AT5G10960	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
ath-u.5	AT1G80780	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
bra-r.6	103853216	probable CCR4-associated factor 1 homolog 6
bra-r.6	103846764	probable CCR4-associated factor 1 homolog 10
bra-r.6	103832455	probable CCR4-associated factor 1 homolog 6
vvi-u.5	100255985	probable CCR4-associated factor 1 homolog 7
vvi-u.5	100250028	probable CCR4-associated factor 1 homolog 7
vvi-u.5	100248407	probable CCR4-associated factor 1 homolog 7
ghi-r.1	107893466	probable CCR4-associated factor 1 homolog 7
ghi-r.1	107901685	probable CCR4-associated factor 1 homolog 6
ghi-r.1	107906843	probable CCR4-associated factor 1 homolog 7
bna-r.1	111198017	probable CCR4-associated factor 1 homolog 10
bna-r.1	106396867	probable CCR4-associated factor 1 homolog 7
bna-r.1	106415634	probable CCR4-associated factor 1 homolog 10
cit-r.1	102622681	probable CCR4-associated factor 1 homolog 7
cit-r.1	102626974	probable CCR4-associated factor 1 homolog 6
cit-r.1	102628865	probable CCR4-associated factor 1 homolog 6
sly-u.5	101244756	probable CCR4-associated factor 1 homolog 7
sly-u.5	101256741	probable CCR4-associated factor 1 homolog 7
sly-u.5	101258664	probable CCR4-associated factor 1 homolog 6
sot-r.1	102595031	probable CCR4-associated factor 1 homolog 7
sot-r.1	102598567	probable CCR4-associated factor 1 homolog 7
sot-r.1	102605889	probable CCR4-associated factor 1 homolog 6
nta-r.1	107761776	putative CCR4-associated factor 1 homolog 6
nta-r.1	107788970	putative CCR4-associated factor 1 homolog 7
nta-r.1	107818443	putative CCR4-associated factor 1 homolog 6
osa-u.5	4347066	probable CCR4-associated factor 1 homolog 7
osa-u.5	4331006	probable CCR4-associated factor 1 homolog 7
zma-u.5	100282279	CCR4-NOT transcription complex subunit 7
zma-u.5	100216888	uncharacterized LOC100216888
zma-u.5	100193739	CCR4-NOT transcription complex subunit 7
tae-r.2	123128774	probable CCR4-associated factor 1 homolog 7
tae-r.2	123139130	probable CCR4-associated factor 1 homolog 7
tae-r.2	123103880	probable CCR4-associated factor 1 homolog 7
hvu-r.1	123401958	probable CCR4-associated factor 1 homolog 7
hvu-r.1	123398198	probable CCR4-associated factor 1 homolog 7
sbi-r.1	8056387	probable CCR4-associated factor 1 homolog 7
sbi-r.1	8060251	probable CCR4-associated factor 1 homolog 7
bdi-r.1	100838839	probable CCR4-associated factor 1 homolog 7
bdi-r.1	100828698	probable CCR4-associated factor 1 homolog 7
cre-r.1	CHLRE_03g157300v5	uncharacterized protein

Top 50 coexpressed genes to 100799461 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100799461 (gma-u.5 coexpression data)

CoexMap"100799461"

[Cytoscape]

Annotation

functional annotation

KEGG

gmx03018 [list] [network] RNA degradation (191 genes)

GO BP

GO CC

GO:0030015 [list] [network] CCR4-NOT core complex	(26 genes)	IEA
GO:0030014 [list] [network] CCR4-NOT complex	(41 genes)	IEA
GO:0000932 [list] [network] P-body	(67 genes)	IEA

GO MF

GO:0004535 [list] [network] poly(A)-specific ribonuclease activity	(14 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(6221 genes)	IEA

Protein

NP_001304622.2 [sequence] [blastp]
NP_001357575.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, nucl 1, mito 1, pero 1, cysk 1, nucl_plas 1	(predict for NP_001304622.2)
cyto 6, nucl 1, mito 1, pero 1, cysk 1, nucl_plas 1	(predict for NP_001357575.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001304622.2)
other 8	(predict for NP_001357575.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100799461	gma-r.7 for 100799461	gma-u.5 for 100798365	gma-u.5 for 100789409	gma-u.5 for 100785970	mtr-u.5 for 112420417	mtr-u.5 for 112421400	ppo-u.5 for 7493220	ppo-u.5 for 7458412	ppo-u.5 for 7455670	ath-u.5 for AT2G32070	ath-u.5 for AT5G10960	ath-u.5 for AT1G80780	bra-r.6 for 103853216	bra-r.6 for 103846764	bra-r.6 for 103832455	vvi-u.5 for 100255985	vvi-u.5 for 100250028	vvi-u.5 for 100248407	ghi-r.1 for 107893466	ghi-r.1 for 107901685	ghi-r.1 for 107906843	bna-r.1 for 111198017	bna-r.1 for 106396867	bna-r.1 for 106415634	cit-r.1 for 102622681	cit-r.1 for 102626974	cit-r.1 for 102628865	sly-u.5 for 101244756	sly-u.5 for 101256741	sly-u.5 for 101258664	sot-r.1 for 102595031	sot-r.1 for 102598567	sot-r.1 for 102605889	nta-r.1 for 107761776	nta-r.1 for 107788970	nta-r.1 for 107818443	osa-u.5 for 4347066	osa-u.5 for 4331006	zma-u.5 for 100282279	zma-u.5 for 100216888	zma-u.5 for 100193739	tae-r.2 for 123128774	tae-r.2 for 123139130	tae-r.2 for 123103880	hvu-r.1 for 123401958	hvu-r.1 for 123398198	sbi-r.1 for 8056387	sbi-r.1 for 8060251	bdi-r.1 for 100838839	bdi-r.1 for 100828698	cre-r.1 for CHLRE_03g157300v5

Ortholog

Ortholog ID: 1534

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*