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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100789409   probable CCR4-associated factor 1 homolog 7 
 gma-r.7   100789409   probable CCR4-associated factor 1 homolog 7 
 gma-m.5   100789409   probable CCR4-associated factor 1 homolog 7 
 gma-u.5   100799461   probable CCR4-associated factor 1 homolog 7 
 gma-u.5   100798365   probable CCR4-associated factor 1 homolog 7 
 gma-u.5   100785970   probable CCR4-associated factor 1 homolog 7 
 mtr-u.5   112420417   probable CCR4-associated factor 1 homolog 7 
 mtr-u.5   112421400   probable CCR4-associated factor 1 homolog 7 
 ppo-u.5   7493220   probable CCR4-associated factor 1 homolog 6 
 ppo-u.5   7458412   probable CCR4-associated factor 1 homolog 6 
 ppo-u.5   7455670   probable CCR4-associated factor 1 homolog 7 
 ath-u.5   AT2G32070   Polynucleotidyl transferase, ribonuclease H-like superfamily protein 
 ath-u.5   AT5G10960   Polynucleotidyl transferase, ribonuclease H-like superfamily protein 
 ath-u.5   AT1G80780   Polynucleotidyl transferase, ribonuclease H-like superfamily protein 
 vvi-u.5   100255985   probable CCR4-associated factor 1 homolog 7 
 vvi-u.5   100250028   probable CCR4-associated factor 1 homolog 7 
 vvi-u.5   100248407   probable CCR4-associated factor 1 homolog 7 
 sly-u.5   101244756   probable CCR4-associated factor 1 homolog 7 
 sly-u.5   101256741   probable CCR4-associated factor 1 homolog 7 
 sly-u.5   101258664   probable CCR4-associated factor 1 homolog 6 
 osa-u.5   4347066   probable CCR4-associated factor 1 homolog 7 
 osa-u.5   4331006   probable CCR4-associated factor 1 homolog 7 
 zma-u.5   100282279   CCR4-NOT transcription complex subunit 7 
 zma-u.5   100216888   uncharacterized LOC100216888 
 zma-u.5   100193739   CCR4-NOT transcription complex subunit 7 

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Top 50 coexpressed genes to 100789409 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100789409 (gma-u.5 coexpression data)

CoexMap"100789409"


gmaLOC100789409 | Entrez gene ID : 100789409      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 2 3 3 3 3 2 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03018 [list] [network] RNA degradation (191 genes)
GO BP
GO CC
GO:0030015 [list] [network] CCR4-NOT core complex  (26 genes)  IEA  
GO:0030014 [list] [network] CCR4-NOT complex  (41 genes)  IEA  
GO:0000932 [list] [network] P-body  (67 genes)  IEA  
GO MF
GO:0004535 [list] [network] poly(A)-specific ribonuclease activity  (14 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (6221 genes)  IEA  
Protein XP_003530297.1 [sequence] [blastp]
XP_003530298.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  mito 1,  pero 1,  cysk 1,  nucl_plas 1  (predict for XP_003530297.1)
cyto 6,  nucl 1,  mito 1,  pero 1,  cysk 1,  nucl_plas 1  (predict for XP_003530298.1)
Subcellular
localization
TargetP
other 8  (predict for XP_003530297.1)
other 8  (predict for XP_003530298.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100789409

.
gma-r.7
for
100789409

.
gma-m.5
for
100789409

.
gma-u.5
for
100799461

.
gma-u.5
for
100798365

.
gma-u.5
for
100785970

.
mtr-u.5
for
112420417

.
mtr-u.5
for
112421400

.
ppo-u.5
for
7493220

.
ppo-u.5
for
7458412

.
ppo-u.5
for
7455670

.
ath-u.5
for
AT2G32070

.
ath-u.5
for
AT5G10960

.
ath-u.5
for
AT1G80780

.
vvi-u.5
for
100255985

.
vvi-u.5
for
100250028

.
vvi-u.5
for
100248407

.
sly-u.5
for
101244756

.
sly-u.5
for
101256741

.
sly-u.5
for
101258664

.
osa-u.5
for
4347066

.
osa-u.5
for
4331006

.
zma-u.5
for
100282279

.
zma-u.5
for
100216888

.
zma-u.5
for
100193739

.


Ortholog ID: 1534
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT2G32070 AT1G80780 LOC100785970 LOC100798365 LOC101256741 LOC101244756 LOC4347066 LOC4331006 LOC100216888 LOC100282279 LOC103855893 LOC103867670 LOC100248407 LOC100250028 LOC7493220 LOC7458412 LOC112421400 LOC112420417 LOC123139130 LOC123103880 LOC123398198 LOC123401958 LOC107888391 LOC107906843 LOC106429712 LOC106415634 CHLRE_03g157300v5 LOC8056387 LOC8060251 LOC102605889 LOC102598567 LOC102628865 LOC102626974 LOC100828698 LOC100838839 LOC107767310 LOC107761776
Function* Polynucleotidyl transferase, ribonuclease H-like superfamily protein Polynucleotidyl transferase, ribonuclease H-like superfamily protein probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 7 uncharacterized LOC100216888 CCR4-NOT transcription complex subunit 7 probable CCR4-associated factor 1 homolog 10 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 6 probable CCR4-associated factor 1 homolog 6 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 6 probable CCR4-associated factor 1 homolog 10 uncharacterized protein probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 6 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 6 probable CCR4-associated factor 1 homolog 6 probable CCR4-associated factor 1 homolog 7 probable CCR4-associated factor 1 homolog 7 putative CCR4-associated factor 1 homolog 7 putative CCR4-associated factor 1 homolog 6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma04814 Motor proteins 2
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 4
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 10
sly04145 Phagosome 3
sly03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 4
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01250 Biosynthesis of nucleotide sugars 3
ppo01200 Carbon metabolism 2
ppo00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 4
ppo03018 RNA degradation 2
ppo03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 6
tae03020 RNA polymerase 3
tae03018 RNA degradation 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 5
hvu00020 Citrate cycle (TCA cycle) 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
bna00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03015 mRNA surveillance pathway 2
cre00564 Glycerophospholipid metabolism 2
cre04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
sot00510 N-Glycan biosynthesis 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
sot03040 Spliceosome 2
sot04141 Protein processing in endoplasmic reticulum 2
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00510 N-Glycan biosynthesis 2
bdi00513 Various types of N-glycan biosynthesis 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 2
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00480 Glutathione metabolism 3
nta03018 RNA degradation 2
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817767 844417 100785970 100798365 101256741 101244756 4347066 4331006 100216888 100282279 103855893 103867670 100248407 100250028 7493220 7458412 112421400 112420417 123139130 123103880 123398198 123401958 107888391 107906843 106429712 106415634 5723043 8056387 8060251 102605889 102598567 102628865 102626974 100828698 100838839 107767310 107761776
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