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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100799818   tRNA pseudouridine synthase A-like 
 gma-r.7   100799818   tRNA pseudouridine synthase A-like 
 gma-u.5   100802586   tRNA pseudouridine synthase A 
 mtr-u.5   11429209   tRNA pseudouridine synthase A 
 ppo-u.5   18111171   uncharacterized LOC18111171 
 ath-u.5   AT1G09800   Pseudouridine synthase family protein 
 bra-r.6   103871756   tRNA pseudouridine synthase A 
 vvi-u.5   100259448   uncharacterized LOC100259448 
 ghi-r.1   107921089   tRNA pseudouridine synthase A 
 ghi-r.1   107925348   tRNA pseudouridine synthase A 
 bna-r.1   106346244   tRNA pseudouridine synthase A-like 
 bna-r.1   106400913   tRNA pseudouridine synthase A-like 
 bna-r.1   106417676   tRNA pseudouridine synthase A 
 cit-r.1   102631123   uncharacterized LOC102631123 
 sly-u.5   101268033   uncharacterized LOC101268033 
 sot-r.1   102591350   tRNA pseudouridine synthase A 
 nta-r.1   107770772   uncharacterized LOC107770772 
 nta-r.1   107792918   uncharacterized LOC107792918 
 osa-u.5   4351716   uncharacterized LOC4351716 
 zma-u.5   100280567   pseudouridylate synthase 
 tae-r.2   123120024   tRNA pseudouridine synthase A 
 tae-r.2   123111073   tRNA pseudouridine synthase A 
 tae-r.2   123102869   tRNA pseudouridine synthase A 
 hvu-r.1   123394910   tRNA pseudouridine synthase A 
 sbi-r.1   8084762   tRNA pseudouridine synthase A 
 bdi-r.1   100839764   tRNA pseudouridine synthase A 

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Top 50 coexpressed genes to 100799818 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100799818 (gma-u.5 coexpression data)

CoexMap"100799818"


gmaLOC100799818 | Entrez gene ID : 100799818      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 1 1 1 1 2 3 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031119 [list] [network] tRNA pseudouridine synthesis  (13 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (28 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (2019 genes)  IEA  
Protein NP_001242177.2 [sequence] [blastp]
XP_006598748.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 3,  cysk_nucl 3  (predict for NP_001242177.2)
nucl 3,  cyto 2,  cysk 2,  chlo 1,  cysk_plas 1,  cyto_plas 1  (predict for XP_006598748.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001242177.2)
other 9  (predict for XP_006598748.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100799818
gma-r.7
for
100799818
gma-u.5
for
100802586
mtr-u.5
for
11429209
ppo-u.5
for
18111171
ath-u.5
for
AT1G09800
bra-r.6
for
103871756
vvi-u.5
for
100259448
ghi-r.1
for
107921089
ghi-r.1
for
107925348
bna-r.1
for
106346244
bna-r.1
for
106400913
bna-r.1
for
106417676
cit-r.1
for
102631123
sly-u.5
for
101268033
sot-r.1
for
102591350
nta-r.1
for
107770772
nta-r.1
for
107792918
osa-u.5
for
4351716
zma-u.5
for
100280567
tae-r.2
for
123120024
tae-r.2
for
123111073
tae-r.2
for
123102869
hvu-r.1
for
123394910
sbi-r.1
for
8084762
bdi-r.1
for
100839764


Ortholog ID: 10442
Species gma gma mtr ppo ath bra vvi ghi ghi bna bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC100799818 LOC100802586 LOC11429209 LOC18111171 AT1G09800 LOC103871756 LOC100259448 LOC107921089 LOC107925348 LOC106346244 LOC106400913 LOC106417676 LOC102631123 LOC101268033 LOC102591350 LOC107770772 LOC107792918 LOC4351716 LOC100280567 LOC123120024 LOC123111073 LOC123102869 LOC123394910 LOC8084762 LOC100839764
Function* tRNA pseudouridine synthase A-like tRNA pseudouridine synthase A tRNA pseudouridine synthase A uncharacterized LOC18111171 Pseudouridine synthase family protein tRNA pseudouridine synthase A uncharacterized LOC100259448 tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A-like tRNA pseudouridine synthase A-like tRNA pseudouridine synthase A uncharacterized LOC102631123 uncharacterized LOC101268033 tRNA pseudouridine synthase A uncharacterized LOC107770772 uncharacterized LOC107792918 uncharacterized LOC4351716 pseudouridylate synthase tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03420 Nucleotide excision repair 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03015 mRNA surveillance pathway 2
gma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
ppo00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
osa03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00260 Glycine, serine and threonine metabolism 2
zma00261 Monobactam biosynthesis 2
zma00270 Cysteine and methionine metabolism 2
zma00300 Lysine biosynthesis 2
zma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100799818 100802586 11429209 18111171 837510 103871756 100259448 107921089 107925348 106346244 106400913 106417676 102631123 101268033 102591350 107770772 107792918 4351716 100280567 123120024 123111073 123102869 123394910 8084762 100839764
The preparation time of this page was 1.8 [sec].