ATTED-II : GeneCoexpression result

Species	Gene	Description
sot-r.1	102591350	tRNA pseudouridine synthase A
sly-u.5	101268033	uncharacterized LOC101268033
nta-r.1	107792918	uncharacterized LOC107792918
nta-r.1	107770772	uncharacterized LOC107770772
ath-u.5	AT1G09800	Pseudouridine synthase family protein
gma-u.5	100802586	tRNA pseudouridine synthase A
gma-u.5	100799818	tRNA pseudouridine synthase A-like
bra-r.6	103871756	tRNA pseudouridine synthase A
vvi-u.5	100259448	uncharacterized LOC100259448
ppo-u.5	18111171	uncharacterized LOC18111171
mtr-u.5	11429209	tRNA pseudouridine synthase A
ghi-r.1	107925348	tRNA pseudouridine synthase A
ghi-r.1	107921089	tRNA pseudouridine synthase A
bna-r.1	106400913	tRNA pseudouridine synthase A-like
bna-r.1	106346244	tRNA pseudouridine synthase A-like
bna-r.1	106417676	tRNA pseudouridine synthase A
cit-r.1	102631123	uncharacterized LOC102631123
osa-u.5	4351716	uncharacterized LOC4351716
zma-u.5	100280567	pseudouridylate synthase
tae-r.2	123120024	tRNA pseudouridine synthase A
tae-r.2	123111073	tRNA pseudouridine synthase A
tae-r.2	123102869	tRNA pseudouridine synthase A
hvu-r.1	123394910	tRNA pseudouridine synthase A
sbi-r.1	8084762	tRNA pseudouridine synthase A
bdi-r.1	100839764	tRNA pseudouridine synthase A

Annotation

functional annotation

KEGG

GO BP

GO:0031119 [list] [network] tRNA pseudouridine synthesis

(7 genes)

IEA

GO CC

GO MF

GO:0009982 [list] [network] pseudouridine synthase activity	(18 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1335 genes)	IEA

Protein

XP_006349329.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto 1, chlo 1, vacu 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_006349329.1)

Subcellular
localization
TargetP

other 7, chlo 4

(predict for XP_006349329.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102591350	sly-u.5 for 101268033	nta-r.1 for 107792918	nta-r.1 for 107770772	ath-u.5 for AT1G09800	gma-u.5 for 100802586	gma-u.5 for 100799818	bra-r.6 for 103871756	vvi-u.5 for 100259448	ppo-u.5 for 18111171	mtr-u.5 for 11429209	ghi-r.1 for 107925348	ghi-r.1 for 107921089	bna-r.1 for 106400913	bna-r.1 for 106346244	bna-r.1 for 106417676	cit-r.1 for 102631123	osa-u.5 for 4351716	zma-u.5 for 100280567	tae-r.2 for 123120024	tae-r.2 for 123111073	tae-r.2 for 123102869	hvu-r.1 for 123394910	sbi-r.1 for 8084762	bdi-r.1 for 100839764

Ortholog

Ortholog ID: 10442

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

tRNA pseudouridine synthase A

uncharacterized LOC101268033

uncharacterized LOC107792918

uncharacterized LOC107770772

Pseudouridine synthase family protein

tRNA pseudouridine synthase A

tRNA pseudouridine synthase A-like

tRNA pseudouridine synthase A

uncharacterized LOC100259448

uncharacterized LOC18111171

tRNA pseudouridine synthase A

tRNA pseudouridine synthase A-like

tRNA pseudouridine synthase A

uncharacterized LOC102631123

uncharacterized LOC4351716

pseudouridylate synthase

tRNA pseudouridine synthase A

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03030	DNA replication	2
nta03410	Base excision repair	2
nta03420	Nucleotide excision repair	2
nta03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03030	DNA replication	2
nta03410	Base excision repair	2
nta03420	Nucleotide excision repair	2
nta03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma03015	mRNA surveillance pathway	2
gma04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03420	Nucleotide excision repair	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	2
ppo00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	5
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	3
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	6
bna03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	4
cit03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03440	Homologous recombination	2
osa03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00260	Glycine, serine and threonine metabolism	2
zma00261	Monobactam biosynthesis	2
zma00270	Cysteine and methionine metabolism	2
zma00300	Lysine biosynthesis	2
zma01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	5
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

102591350

101268033

107792918

107770772

837510

100802586

100799818

103871756

100259448

18111171

11429209

107925348

107921089

106400913

106346244

106417676

102631123

4351716

100280567

123120024

123111073

123102869

123394910

8084762

100839764

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 102591350 (sot-r.1 coexpression data)

Top 50 enrichment test to 102591350 (sot-r.1 coexpression data)


Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	1	1	2	1	2	1	1	1	1	2	3	1	1	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102591350 (sot-r.1 coexpression data)

Top 50 enrichment test to 102591350 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**