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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100799818   tRNA pseudouridine synthase A-like 
 gma-r.7   100799818   tRNA pseudouridine synthase A-like 
 gma-u.5   100802586   tRNA pseudouridine synthase A 
 mtr-u.5   11429209   tRNA pseudouridine synthase A 
 ppo-u.5   18111171   uncharacterized LOC18111171 
 ath-u.5   AT1G09800   Pseudouridine synthase family protein 
 vvi-u.5   100259448   uncharacterized LOC100259448 
 sly-u.5   101268033   uncharacterized LOC101268033 
 osa-u.5   4351716   uncharacterized LOC4351716 
 zma-u.5   100280567   pseudouridylate synthase 

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Top 50 coexpressed genes to 100799818 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100799818 (gma-u.5 coexpression data)

CoexMap"100799818"


gmaLOC100799818 | Entrez gene ID : 100799818      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031119 [list] [network] tRNA pseudouridine synthesis  (13 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (28 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (2019 genes)  IEA  
Protein NP_001242177.2 [sequence] [blastp]
XP_006598748.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 3,  cysk_nucl 3  (predict for NP_001242177.2)
nucl 3,  cyto 2,  cysk 2,  chlo 1,  cysk_plas 1,  cyto_plas 1  (predict for XP_006598748.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001242177.2)
other 9  (predict for XP_006598748.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100799818

.
gma-r.7
for
100799818

.
gma-u.5
for
100802586

.
mtr-u.5
for
11429209

.
ppo-u.5
for
18111171

.
ath-u.5
for
AT1G09800

.
vvi-u.5
for
100259448

.
sly-u.5
for
101268033

.
osa-u.5
for
4351716

.
zma-u.5
for
100280567

.


Ortholog ID: 10442
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT1G09800 LOC100802586 LOC100799818 LOC101268033 LOC4351716 LOC100280567 LOC103871756 LOC100259448 LOC18111171 LOC11429209 LOC123102869 LOC123120024 LOC123394910 LOC107925348 LOC107921089 LOC106346244 LOC106417676 LOC8084762 LOC102591350 LOC102631123 LOC100839764 LOC107792918 LOC107770772
Function* Pseudouridine synthase family protein tRNA pseudouridine synthase A tRNA pseudouridine synthase A-like uncharacterized LOC101268033 uncharacterized LOC4351716 pseudouridylate synthase tRNA pseudouridine synthase A uncharacterized LOC100259448 uncharacterized LOC18111171 tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A-like tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A uncharacterized LOC102631123 tRNA pseudouridine synthase A uncharacterized LOC107792918 uncharacterized LOC107770772
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03015 mRNA surveillance pathway 2
gma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03420 Nucleotide excision repair 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
osa03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00260 Glycine, serine and threonine metabolism 2
zma00261 Monobactam biosynthesis 2
zma00270 Cysteine and methionine metabolism 2
zma00300 Lysine biosynthesis 2
zma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
ppo00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837510 100802586 100799818 101268033 4351716 100280567 103871756 100259448 18111171 11429209 123102869 123120024 123394910 107925348 107921089 106346244 106417676 8084762 102591350 102631123 100839764 107792918 107770772
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