ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	rps4	ribosomal protein S4
gma-r.7	rps4	ribosomal protein S4
mtr-u.5	rps4	ribosomal protein S4
mtr-u.5	120576130	30S ribosomal protein S4, chloroplastic
mtr-u.5	120576132	30S ribosomal protein S4, chloroplastic
ppo-u.5	rps4	ribosomal protein S4
ath-u.5	rps4	ribosomal protein S4
vvi-u.5	rps4	ribosomal protein S4
ghi-r.1	rps4	ribosomal protein S4
cit-r.1	rps4	ribosomal protein S4
sly-u.5	rps4	ribosomal protein S4
sot-r.1	rps4	ribosomal protein S4
nta-r.1	rps4	ribosomal protein S4
osa-u.5	rps4	ribosomal protein S4
zma-u.5	rps4	ribosomal protein S4
sbi-r.1	rps4	ribosomal protein S4
bdi-r.1	rps4	ribosomal protein S4

Annotation

functional annotation

KEGG

gmx03010 [list] [network] Ribosome (1072 genes)

GO BP

GO CC

GO MF

Protein

YP_538753.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 3, cyto 3, cyto_nucl 3, mito 2

(predict for YP_538753.1)

Subcellular
localization
TargetP

mito 6

(predict for YP_538753.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for rps4	gma-r.7 for rps4	mtr-u.5 for rps4	mtr-u.5 for 120576130	mtr-u.5 for 120576132	ppo-u.5 for rps4	ath-u.5 for rps4	vvi-u.5 for rps4	ghi-r.1 for rps4	cit-r.1 for rps4	sly-u.5 for rps4	sot-r.1 for rps4	nta-r.1 for rps4	osa-u.5 for rps4	zma-u.5 for rps4	sbi-r.1 for rps4	bdi-r.1 for rps4

Ortholog

Ortholog ID: 11146

Species

gma

mtr

ppo

ath

vvi

ghi

cit

sly

sot

nta

osa

zma

sbi

bdi

Symbol

rps4

LOC120576130

LOC120576132

LOC120576897

rps4

Function^*

ribosomal protein S4

30S ribosomal protein S4, chloroplastic

ribosomal protein S4

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	8
gma00195	Photosynthesis	6
gma03010	Ribosome	3
gma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	8
mtr00195	Photosynthesis	6
mtr00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	6
mtr00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	9
ppo00970	Aminoacyl-tRNA biosynthesis	3
ppo00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	9
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	10
vvi00195	Photosynthesis	8
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	10
ghi00195	Photosynthesis	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	9
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	10
sly00190	Oxidative phosphorylation	2
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	7
sot00195	Photosynthesis	4
sot00190	Oxidative phosphorylation	3
sot01200	Carbon metabolism	2
sot03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	9
nta00970	Aminoacyl-tRNA biosynthesis	2
nta00190	Oxidative phosphorylation	2
nta00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00195	Photosynthesis	6
osa03010	Ribosome	4
osa00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00195	Photosynthesis	8
zma03010	Ribosome	6
zma00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	8
sbi00195	Photosynthesis	4
sbi00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	6
bdi03010	Ribosome	3
bdi00195	Photosynthesis	3
bdi00970	Aminoacyl-tRNA biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

3989263

120576130

120576132

120576897

4929666

844765

4025094

3989146

4271134

3950465

4099972

800429

3131457

845238

4549191

6439771

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to rps4 (gma-u.5 coexpression data)

Top 50 enrichment test to rps4 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	vvi	ghi	cit	sly	sot	nta	osa	zma	sbi	bdi	bra	bna	tae	hvu	cre
Paralog	2	3	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to rps4 (gma-u.5 coexpression data)

Top 50 enrichment test to rps4 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**