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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-m.5   11409378   ribonuclease E/G-like protein, chloroplastic 
 mtr-u.5   11409378   ribonuclease E/G-like protein, chloroplastic 
 mtr-r.5   11409378   ribonuclease E/G-like protein, chloroplastic 
 gma-u.5   100809907   ribonuclease E/G-like protein, chloroplastic 
 gma-u.5   100795436   ribonuclease E/G-like protein, chloroplastic 
 ppo-u.5   7469343   ribonuclease E/G-like protein, chloroplastic 
 ath-u.5   RNEE/G   RNAse E/G-like protein 
 bra-r.6   103828537   ribonuclease E/G-like protein, chloroplastic 
 vvi-u.5   100256290   ribonuclease E/G-like protein, chloroplastic 
 ghi-r.1   107924528   ribonuclease E/G-like protein, chloroplastic 
 ghi-r.1   107912469   ribonuclease E/G-like protein, chloroplastic 
 bna-r.1   106366665   ribonuclease E/G-like protein, chloroplastic 
 bna-r.1   106405683   ribonuclease E/G-like protein, chloroplastic 
 cit-r.1   102607608   ribonuclease E/G-like protein, chloroplastic 
 sly-u.5   100136876   ribonuclease E 
 sot-r.1   102583907   ribonuclease E/G-like protein, chloroplastic 
 nta-r.1   107793058   ribonuclease E/G-like protein, chloroplastic 
 nta-r.1   107760436   ribonuclease E/G-like protein, chloroplastic 
 osa-u.5   4345271   ribonuclease E/G-like protein, chloroplastic 
 zma-u.5   103643177   ribonuclease E/G-like protein, chloroplastic 
 tae-r.2   123165327   ribonuclease E/G-like protein, chloroplastic 
 tae-r.2   123160510   ribonuclease E/G-like protein, chloroplastic 
 tae-r.2   123154389   ribonuclease E/G-like protein, chloroplastic 
 hvu-r.1   123413152   ribonuclease E/G-like protein, chloroplastic 
 sbi-r.1   8075550   ribonuclease E/G-like protein, chloroplastic 
 bdi-r.1   100832256   ribonuclease E/G-like protein, chloroplastic 

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Top 50 coexpressed genes to 11409378 (mtr-m.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11409378 (mtr-m.5 coexpression data)

CoexMap"11409378"


mtrLOC11409378 | Entrez gene ID : 11409378      
Species mtr gma ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 1 1 1 1 2 2 1 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006364 [list] [network] rRNA processing  (201 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (4514 genes)  IEA  
GO MF
GO:2001070 [list] [network] starch binding  (11 genes)  IEA  
GO:0004540 [list] [network] RNA nuclease activity  (462 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1400 genes)  IEA  
Protein XP_003615550.2 [sequence] [blastp]
XP_024640129.1 [sequence] [blastp]
XP_039690123.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  plas 3,  cysk_plas 2,  chlo 1,  cysk 1  (predict for XP_003615550.2)
cyto 3,  cysk 3,  nucl 2,  chlo 1,  nucl_plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_024640129.1)
nucl 4,  chlo 3,  plas 1,  cysk_plas 1,  cysk 1  (predict for XP_039690123.1)
Subcellular
localization
TargetP
other 5  (predict for XP_003615550.2)
other 7  (predict for XP_024640129.1)
other 5  (predict for XP_039690123.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-m.5
for
11409378
mtr-u.5
for
11409378
mtr-r.5
for
11409378
gma-u.5
for
100809907
gma-u.5
for
100795436
ppo-u.5
for
7469343
ath-u.5
for
RNEE/G
bra-r.6
for
103828537
vvi-u.5
for
100256290
ghi-r.1
for
107924528
ghi-r.1
for
107912469
bna-r.1
for
106366665
bna-r.1
for
106405683
cit-r.1
for
102607608
sly-u.5
for
100136876
sot-r.1
for
102583907
nta-r.1
for
107793058
nta-r.1
for
107760436
osa-u.5
for
4345271
zma-u.5
for
103643177
tae-r.2
for
123165327
tae-r.2
for
123160510
tae-r.2
for
123154389
hvu-r.1
for
123413152
sbi-r.1
for
8075550
bdi-r.1
for
100832256


Ortholog ID: 10644
Species mtr gma gma ppo ath bra vvi ghi ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC11409378 LOC100809907 LOC100795436 LOC7469343 RNEE/G LOC103828537 LOC100256290 LOC107924528 LOC107912469 LOC106366665 LOC106405683 LOC102607608 LOC100136876 LOC102583907 LOC107793058 LOC107760436 LOC4345271 LOC103643177 LOC123165327 LOC123160510 LOC123154389 LOC123413152 LOC8075550 LOC100832256
Function* ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic RNAse E/G-like protein ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic ribonuclease E/G-like protein, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 6
sbi03010 Ribosome 5
sbi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 11409378 100809907 100795436 7469343 814965 103828537 100256290 107924528 107912469 106366665 106405683 102607608 100136876 102583907 107793058 107760436 4345271 103643177 123165327 123160510 123154389 123413152 8075550 100832256
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