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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-r.5   112416094   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 mtr-u.5   112416094   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 gma-u.5   100806010   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 ppo-u.5   7484690   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 ath-u.5   CRR21   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103845020   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 vvi-u.5   100261119   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 ghi-r.1   107907425   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 ghi-r.1   107907242   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 bna-r.1   106401991   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 bna-r.1   106390890   pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like 
 cit-r.1   112495469   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 sly-u.5   101245567   pentatricopeptide repeat-containing protein 
 sot-r.1   102598740   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 nta-r.1   107830848   pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like 
 nta-r.1   107785888   pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like 
 osa-u.5   4327722   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 zma-u.5   103636058   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 tae-r.2   123078538   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 tae-r.2   123070087   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 tae-r.2   123061445   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 hvu-r.1   123439952   pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like 
 sbi-r.1   8082521   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 bdi-r.1   100836548   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 

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Top 50 coexpressed genes to 112416094 (mtr-r.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 112416094 (mtr-r.5 coexpression data)

CoexMap"112416094"


mtrLOC112416094 | Entrez gene ID : 112416094    
Species mtr gma ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 1 1 1 2 2 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (432 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1400 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5045 genes)  IEA  
Protein XP_024629019.1 [sequence] [blastp]
XP_039684328.1 [sequence] [blastp]
XP_039684329.1 [sequence] [blastp]
XP_039684330.1 [sequence] [blastp]
XP_039684331.1 [sequence] [blastp]
XP_039684332.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 4,  chlo 1,  plas 1  (predict for XP_024629019.1)
nucl 5,  cyto 4,  chlo 1,  plas 1  (predict for XP_039684328.1)
nucl 5,  cyto 4,  chlo 1,  plas 1  (predict for XP_039684329.1)
nucl 5,  cyto 4,  chlo 1,  plas 1  (predict for XP_039684330.1)
nucl 5,  cyto 4,  chlo 1,  plas 1  (predict for XP_039684331.1)
nucl 5,  cyto 4,  chlo 1,  plas 1  (predict for XP_039684332.1)
Subcellular
localization
TargetP
other 7  (predict for XP_024629019.1)
other 7  (predict for XP_039684328.1)
other 7  (predict for XP_039684329.1)
other 7  (predict for XP_039684330.1)
other 7  (predict for XP_039684331.1)
other 7  (predict for XP_039684332.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-r.5
for
112416094
mtr-u.5
for
112416094
gma-u.5
for
100806010
ppo-u.5
for
7484690
ath-u.5
for
CRR21
bra-r.6
for
103845020
vvi-u.5
for
100261119
ghi-r.1
for
107907425
ghi-r.1
for
107907242
bna-r.1
for
106401991
bna-r.1
for
106390890
cit-r.1
for
112495469
sly-u.5
for
101245567
sot-r.1
for
102598740
nta-r.1
for
107830848
nta-r.1
for
107785888
osa-u.5
for
4327722
zma-u.5
for
103636058
tae-r.2
for
123078538
tae-r.2
for
123070087
tae-r.2
for
123061445
hvu-r.1
for
123439952
sbi-r.1
for
8082521
bdi-r.1
for
100836548


Ortholog ID: 11448
Species mtr gma ppo ath bra vvi ghi ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC112416094 LOC100806010 LOC7484690 CRR21 LOC103845020 LOC100261119 LOC107907425 LOC107907242 LOC106401991 LOC106390890 LOC112495469 LOC101245567 LOC102598740 LOC107830848 LOC107785888 LOC4327722 LOC103636058 LOC123078538 LOC123070087 LOC123061445 LOC123439952 LOC8082521 LOC100836548
Function* pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
cit00710 Carbon fixation by Calvin cycle 2
cit01230 Biosynthesis of amino acids 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00740 Riboflavin metabolism 2
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00051 Fructose and mannose metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 112416094 100806010 7484690 835668 103845020 100261119 107907425 107907242 106401991 106390890 112495469 101245567 102598740 107830848 107785888 4327722 103636058 123078538 123070087 123061445 123439952 8082521 100836548
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