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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   112495469   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 ath-u.5   CRR21   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100806010   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 vvi-u.5   100261119   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 ppo-u.5   7484690   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 mtr-u.5   112416094   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 sly-u.5   101245567   pentatricopeptide repeat-containing protein 
 osa-u.5   4327722   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 
 zma-u.5   103636058   pentatricopeptide repeat-containing protein At5g55740, chloroplastic 

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Top 50 coexpressed genes to 112495469 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 112495469 (cit-r.1 coexpression data)

CoexMap"112495469"


citLOC112495469 | Entrez gene ID : 112495469    
Species cit ath gma vvi ppo mtr sly osa zma bdi hvu bra bna sbi ghi sot nta cre tae
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (369 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1117 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_024953699.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 3,  chlo_mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_024953699.1)
Subcellular
localization
TargetP
chlo 6,  other 4  (predict for XP_024953699.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
112495469
ath-u.5
for
CRR21
gma-u.5
for
100806010
vvi-u.5
for
100261119
ppo-u.5
for
7484690
mtr-u.5
for
112416094
sly-u.5
for
101245567
osa-u.5
for
4327722
zma-u.5
for
103636058


Ortholog ID: 11448
Species cit ath bra ghi ghi bna bna gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC112495469 CRR21 LOC103845020 LOC107907425 LOC107907242 LOC106390890 LOC106401991 LOC100806010 LOC100261119 LOC7484690 LOC112416094 LOC101245567 LOC102598740 LOC107830848 LOC107785888 LOC4327722 LOC103636058 LOC123070087 LOC123078538 LOC123439952 LOC8082521 LOC100836548
Function* pentatricopeptide repeat-containing protein At5g55740, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like pentatricopeptide repeat-containing protein At5g55740, chloroplastic pentatricopeptide repeat-containing protein At5g55740, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
cit00710 Carbon fixation by Calvin cycle 2
cit01230 Biosynthesis of amino acids 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00740 Riboflavin metabolism 2
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00051 Fructose and mannose metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 112495469 835668 103845020 107907425 107907242 106390890 106401991 100806010 100261119 7484690 112416094 101245567 102598740 107830848 107785888 4327722 103636058 123070087 123078538 123439952 8082521 100836548
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