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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25486714   pentatricopeptide repeat-containing protein At1g03540 
 mtr-r.5   25486714   pentatricopeptide repeat-containing protein At1g03540 
 gma-u.5   100795078   pentatricopeptide repeat-containing protein At1g03540 
 ath-u.5   AT1G03540   Pentatricopeptide repeat (PPR-like) superfamily protein 
 bra-r.6   103836612   pentatricopeptide repeat-containing protein At1g03540 
 vvi-u.5   100267038   pentatricopeptide repeat-containing protein At1g03540 
 ghi-r.1   107909259   pentatricopeptide repeat-containing protein At1g03540 
 ghi-r.1   107886751   pentatricopeptide repeat-containing protein At1g03540 
 cit-r.1   102611639   pentatricopeptide repeat-containing protein At1g03540 
 sly-u.5   101257609   pentatricopeptide repeat-containing protein At1g03540 
 sot-r.1   102593122   pentatricopeptide repeat-containing protein At1g03540 
 nta-r.1   107799642   pentatricopeptide repeat-containing protein At1g03540-like 
 nta-r.1   107789796   pentatricopeptide repeat-containing protein At1g03540-like 
 osa-u.5   4341512   pentatricopeptide repeat-containing protein At1g03540 
 zma-u.5   103626319   pentatricopeptide repeat-containing protein 
 hvu-r.1   123406970   pentatricopeptide repeat-containing protein At1g03540 
 sbi-r.1   8061627   pentatricopeptide repeat-containing protein At1g03540 
 sbi-r.1   8082280   pentatricopeptide repeat-containing protein At1g03540 
 bdi-r.1   100826922   pentatricopeptide repeat-containing protein At1g03540 

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Top 50 coexpressed genes to 25486714 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25486714 (mtr-u.5 coexpression data)

CoexMap"25486714"


mtrLOC25486714 | Entrez gene ID : 25486714      
Species mtr gma ath bra vvi ghi cit sly sot nta osa zma hvu sbi bdi bna tae cre ppo
Paralog 2 1 1 1 1 2 1 1 1 2 1 1 1 2 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (432 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1400 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5045 genes)  IEA  
Protein XP_024631571.1 [sequence] [blastp]
XP_024631572.1 [sequence] [blastp]
XP_024631573.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 4,  chlo 3,  mito 1,  nucl 1,  cysk_nucl 1,  mito_plas 1  (predict for XP_024631571.1)
E.R. 4,  chlo 3,  mito 1,  nucl 1,  cysk_nucl 1,  mito_plas 1  (predict for XP_024631572.1)
E.R. 4,  chlo 3,  mito 1,  nucl 1,  cysk_nucl 1,  mito_plas 1  (predict for XP_024631573.1)
Subcellular
localization
TargetP
other 7  (predict for XP_024631571.1)
other 7  (predict for XP_024631572.1)
other 7  (predict for XP_024631573.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25486714
mtr-r.5
for
25486714
gma-u.5
for
100795078
ath-u.5
for
AT1G03540
bra-r.6
for
103836612
vvi-u.5
for
100267038
ghi-r.1
for
107909259
ghi-r.1
for
107886751
cit-r.1
for
102611639
sly-u.5
for
101257609
sot-r.1
for
102593122
nta-r.1
for
107799642
nta-r.1
for
107789796
osa-u.5
for
4341512
zma-u.5
for
103626319
hvu-r.1
for
123406970
sbi-r.1
for
8061627
sbi-r.1
for
8082280
bdi-r.1
for
100826922


Ortholog ID: 11064
Species mtr gma ath bra vvi ghi ghi cit sly sot nta nta osa zma hvu sbi sbi bdi
Symbol LOC25486714 LOC100795078 AT1G03540 LOC103836612 LOC100267038 LOC107909259 LOC107886751 LOC102611639 LOC101257609 LOC102593122 LOC107799642 LOC107789796 LOC4341512 LOC103626319 LOC123406970 LOC8061627 LOC8082280 LOC100826922
Function* pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540-like pentatricopeptide repeat-containing protein At1g03540-like pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 25486714 100795078 839466 103836612 100267038 107909259 107886751 102611639 101257609 102593122 107799642 107789796 4341512 103626319 123406970 8061627 8082280 100826922
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