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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1  8082280  pentatricopeptide repeat-containing protein At1g03540 
 zma-u.5  103626319  pentatricopeptide repeat-containing protein 
 osa-u.5  4341512  pentatricopeptide repeat-containing protein At1g03540 
 ath-u.5  AT1G03540  Pentatricopeptide repeat (PPR-like) superfamily protein 
 gma-u.5  100795078  pentatricopeptide repeat-containing protein At1g03540 
 sly-u.5  101257609  pentatricopeptide repeat-containing protein At1g03540 
 vvi-u.5  100267038  pentatricopeptide repeat-containing protein At1g03540 
 mtr-u.5  25486714  pentatricopeptide repeat-containing protein At1g03540 

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Top 50 coexpressed genes to 8082280 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8082280 (sbi-r.1 coexpression data)

CoexMap"8082280"


sbiLOC8082280 | Entrez gene ID : 8082280
Species sbi zma osa ath gma sly vvi mtr bra nta cre hvu cit bdi ppo sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (378 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_002437270.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  pero 1,  nucl 1,  plas 1,  vacu 1,  nucl_plas 1  (predict for XP_002437270.1)
Subcellular
localization
TargetP
chlo 5,  other 3  (predict for XP_002437270.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

sbi-r.1
for
8082280

.

zma-u.5
for
103626319

.

osa-u.5
for
4341512

.

ath-u.5
for
AT1G03540

.

gma-u.5
for
100795078

.

sly-u.5
for
101257609

.

vvi-u.5
for
100267038

.

mtr-u.5
for
25486714

.


Ortholog ID: 11064
Species ath gma sly osa zma bra vvi mtr hvu ghi ghi sbi sbi sot cit bdi nta nta
Symbol AT1G03540 LOC100795078 LOC101257609 LOC4341512 LOC103626319 LOC103836612 LOC100267038 LOC25486714 LOC123406970 LOC107909259 LOC107886751 LOC8082280 LOC8061627 LOC102593122 LOC102611639 LOC100826922 LOC107799642 LOC107789796
Function* Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540 pentatricopeptide repeat-containing protein At1g03540-like pentatricopeptide repeat-containing protein At1g03540-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839466 100795078 101257609 4341512 103626319 103836612 100267038 25486714 123406970 107909259 107886751 8082280 8061627 102593122 102611639 100826922 107799642 107789796
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