ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-m.8	4350860	uncharacterized LOC4350860
osa-u.5	4350860	uncharacterized LOC4350860
osa-r.6	4350860	uncharacterized LOC4350860
osa-e.1	4350860	uncharacterized LOC4350860
osa-u.5	4329759	uncharacterized LOC4329759
osa-u.5	4326041	uncharacterized LOC4326041
tae-r.2	123091853	uncharacterized LOC123091853
tae-r.2	123058910	uncharacterized LOC123058910
hvu-r.1	123398312	uncharacterized LOC123398312
hvu-r.1	123448344	uncharacterized LOC123448344
bdi-r.1	100843600	uncharacterized LOC100843600
bdi-r.1	100834851	uncharacterized LOC100834851
bdi-r.1	100838110	uncharacterized LOC100838110
zma-u.5	103636408	uncharacterized LOC103636408
zma-u.5	100194121	uncharacterized LOC100194121
sbi-r.1	8079045	uncharacterized LOC8079045
sbi-r.1	110435737	uncharacterized LOC110435737
sbi-r.1	110435038	uncharacterized LOC110435038
ath-u.5	AT1G14260	RING/FYVE/PHD zinc finger superfamily protein
ath-u.5	AT5G62460	RING/FYVE/PHD zinc finger superfamily protein
gma-u.5	100805050	E3 ubiquitin-protein ligase MARCHF4
gma-u.5	100817542	uncharacterized LOC100817542
gma-u.5	100812998	uncharacterized LOC100812998
sly-u.5	101267890	uncharacterized LOC101267890
sly-u.5	101247951	uncharacterized LOC101247951
bra-r.6	103874679	uncharacterized LOC103874679
bra-r.6	103873230	uncharacterized LOC103873230
bra-r.6	103872120	uncharacterized LOC103872120
vvi-u.5	100259487	uncharacterized LOC100259487
vvi-u.5	100258737	uncharacterized LOC100258737
vvi-u.5	100256824	uncharacterized LOC100256824
ppo-u.5	18104586	uncharacterized LOC18104586
ppo-u.5	18099418	uncharacterized LOC18099418
ppo-u.5	7475543	uncharacterized LOC7475543
mtr-u.5	11418055	uncharacterized LOC11418055
mtr-u.5	11421871	uncharacterized LOC11421871
mtr-u.5	25502689	uncharacterized LOC25502689
ghi-r.1	107912131	uncharacterized LOC107912131
ghi-r.1	107912130	uncharacterized LOC107912130
bna-r.1	106369016	uncharacterized LOC106369016
sot-r.1	102588122	uncharacterized LOC102588122
sot-r.1	102604544	uncharacterized LOC102604544
cit-r.1	102616509	hypothetical protein
cit-r.1	102616298	uncharacterized LOC102616298
cit-r.1	102626552	hypothetical protein
nta-r.1	107800289	uncharacterized LOC107800289
nta-r.1	107794884	uncharacterized LOC107794884
nta-r.1	107793813	uncharacterized LOC107793813
cre-r.1	CHLRE_09g400738v5	uncharacterized protein

Top 50 coexpressed genes to 4350860 (osa-m.8 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4350860 (osa-m.8 coexpression data)

CoexMap"4350860"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0016567 [list] [network] protein ubiquitination

(501 genes)

IEA

GO CC

GO:0016020 [list] [network] membrane

(3446 genes)

IEA

GO MF

GO:0004842 [list] [network] ubiquitin-protein transferase activity	(377 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(840 genes)	IEA

Protein

XP_015617831.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, cyto 2, nucl 1, E.R. 1, golg 1

(predict for XP_015617831.1)

Subcellular
localization
TargetP

other 8

(predict for XP_015617831.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-m.8 for 4350860	osa-u.5 for 4350860	osa-r.6 for 4350860	osa-e.1 for 4350860	osa-u.5 for 4329759	osa-u.5 for 4326041	tae-r.2 for 123091853	tae-r.2 for 123058910	hvu-r.1 for 123398312	hvu-r.1 for 123448344	bdi-r.1 for 100843600	bdi-r.1 for 100834851	bdi-r.1 for 100838110	zma-u.5 for 103636408	zma-u.5 for 100194121	sbi-r.1 for 8079045	sbi-r.1 for 110435737	sbi-r.1 for 110435038	ath-u.5 for AT1G14260	ath-u.5 for AT5G62460	gma-u.5 for 100805050	gma-u.5 for 100817542	gma-u.5 for 100812998	sly-u.5 for 101267890	sly-u.5 for 101247951	bra-r.6 for 103874679	bra-r.6 for 103873230	bra-r.6 for 103872120	vvi-u.5 for 100259487	vvi-u.5 for 100258737	vvi-u.5 for 100256824	ppo-u.5 for 18104586	ppo-u.5 for 18099418	ppo-u.5 for 7475543	mtr-u.5 for 11418055	mtr-u.5 for 11421871	mtr-u.5 for 25502689	ghi-r.1 for 107912131	ghi-r.1 for 107912130	bna-r.1 for 106369016	sot-r.1 for 102588122	sot-r.1 for 102604544	cit-r.1 for 102616509	cit-r.1 for 102616298	cit-r.1 for 102626552	nta-r.1 for 107800289	nta-r.1 for 107794884	nta-r.1 for 107793813	cre-r.1 for CHLRE_09g400738v5

Ortholog

Ortholog ID: 308

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC4329759

uncharacterized LOC4324964

uncharacterized LOC123121689

uncharacterized LOC123096906

uncharacterized LOC123086136

uncharacterized LOC123448344

uncharacterized LOC123445072

uncharacterized LOC123442512

uncharacterized LOC100843600

uncharacterized LOC100834851

uncharacterized LOC100838458

uncharacterized LOC100194121

protein binding protein

uncharacterized LOC100193371

uncharacterized LOC8079045

uncharacterized LOC110435737

uncharacterized LOC110432262

RING/FYVE/PHD zinc finger superfamily protein

uncharacterized LOC100817542

uncharacterized LOC100812120

uncharacterized LOC101260808

uncharacterized LOC101256764

uncharacterized LOC103874679

uncharacterized LOC103872120

uncharacterized LOC100259487

uncharacterized LOC100256824

uncharacterized LOC100250124

uncharacterized LOC18104586

uncharacterized LOC7475543

uncharacterized LOC7492938

uncharacterized LOC11418055

uncharacterized LOC11421871

uncharacterized LOC11437485

uncharacterized LOC107916558

uncharacterized LOC107946515

uncharacterized BNACNNG45990D

uncharacterized LOC125591300

uncharacterized LOC102604544

uncharacterized LOC102584648

uncharacterized LOC102602348

hypothetical protein

uncharacterized LOC102615152

uncharacterized LOC102627455

uncharacterized LOC107760406

uncharacterized LOC107832834

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04145	Phagosome	3
tae04148	Efferocytosis	3
tae04517	IgSF CAM signaling	3
tae04518	Integrin signaling	3
tae04620	Toll-like receptor signaling pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00052	Galactose metabolism	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3
tae04075	Plant hormone signal transduction	3
tae04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu04144	Endocytosis	3
hvu03083	Polycomb repressive complex	2
hvu04120	Ubiquitin mediated proteolysis	2
hvu04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2
bdi03060	Protein export	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00062	Fatty acid elongation	2
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	3
zma04144	Endocytosis	3
zma03250	Viral life cycle - HIV-1	3
zma03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04142	Lysosome	2
sbi03040	Spliceosome	2
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	4
gma04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma04141	Protein processing in endoplasmic reticulum	2
gma04144	Endocytosis	2
gma00510	N-Glycan biosynthesis	2
gma00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4
sly04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00460	Cyanoamino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00562	Inositol phosphate metabolism	2
ppo04070	Phosphatidylinositol signaling system	2
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04148	Efferocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	2
ghi03272	Virion - Hepatitis viruses	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00561	Glycerolipid metabolism	2
bna04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	4
bna04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	3
sot03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	6
sot00640	Propanoate metabolism	2
sot04075	Plant hormone signal transduction	2
sot00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	3
cit04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	2
cre04145	Phagosome	2
cre04148	Efferocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

4329759

4324964

123121689

123096906

123086136

123448344

123445072

123442512

100843600

100834851

100838458

100194121

100284488

100193371

8079045

110435737

110432262

837987

836366

100817542

100812120

101260808

101256764

103874679

103872120

100259487

100256824

100250124

18104586

7475543

7492938

11418055

11421871

11437485

107916558

107946515

106375442

125591300

102604544

102584648

102602348

102616509

102615152

102627455

107760406

107832834

5723150

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Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	6	2	2	3	2	3	2	3	2	3	3	3	3	2	1	2	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4350860 (osa-m.8 coexpression data)

Top 50 enrichment test to 4350860 (osa-m.8 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**