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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   VPS2.1   SNF7 family protein 
 ath-u.5   VPS2.1   SNF7 family protein 
 ath-r.7   VPS2.1   SNF7 family protein 
 ath-e.2   VPS2.1   SNF7 family protein 
 ath-m.4.bio   VPS2.1   SNF7 family protein 
 ath-m.4.hor   VPS2.1   SNF7 family protein 
 ath-m.4.lig   VPS2.1   SNF7 family protein 
 ath-m.4.str   VPS2.1   SNF7 family protein 
 ath-m.4.tis   VPS2.1   SNF7 family protein 
 bra-r.6   103860351   vacuolar protein sorting-associated protein 2 homolog 1 
 bna-r.1   106439778   vacuolar protein sorting-associated protein 2 homolog 1 
 bna-r.1   106418627   vacuolar protein sorting-associated protein 2 homolog 1-like 
 ghi-r.1   107932231   vacuolar protein sorting-associated protein 2 homolog 1 
 ghi-r.1   107929946   vacuolar protein sorting-associated protein 2 homolog 1 
 cit-r.1   102610845   vacuolar protein sorting-associated protein 2 homolog 1 
 gma-u.5   100791887   vacuolar protein sorting-associated protein 2 homolog 1 
 gma-u.5   100526885   vacuolar protein sorting-associated protein 
 vvi-u.5   100255989   vacuolar protein sorting-associated protein 2 homolog 1 
 ppo-u.5   7478111   vacuolar protein sorting-associated protein 2 homolog 1 
 ppo-u.5   18107704   vacuolar protein sorting-associated protein 2 homolog 1 
 mtr-u.5   25500541   vacuolar protein sorting-associated protein 2 homolog 1 
 mtr-u.5   25486474   vacuolar protein sorting-associated protein 2 homolog 1 
 sly-u.5   101247586   SNF7 family protein 
 sot-r.1   102595344   vacuolar protein sorting-associated protein 2 homolog 1 
 nta-r.1   107764456   vacuolar protein sorting-associated protein 2 homolog 1 
 nta-r.1   107831976   vacuolar protein sorting-associated protein 2 homolog 1 
 osa-u.5   4342791   vacuolar protein sorting-associated protein 2 homolog 1 
 osa-u.5   4351205   vacuolar protein sorting-associated protein 2 homolog 1 
 zma-u.5   100193992   uncharacterized LOC100193992 
 zma-u.5   103647208   vacuolar protein sorting-associated protein 2 homolog 1-like 
 zma-u.5   100284688   charged multivesicular body protein 2a 
 tae-r.2   123091770   vacuolar protein sorting-associated protein 2 homolog 1 
 tae-r.2   123096805   vacuolar protein sorting-associated protein 2 homolog 1 
 tae-r.2   123086260   vacuolar protein sorting-associated protein 2 homolog 1 
 hvu-r.1   123448277   vacuolar protein sorting-associated protein 2 homolog 1 
 sbi-r.1   8069133   vacuolar protein sorting-associated protein 2 homolog 1 
 sbi-r.1   8086026   vacuolar protein sorting-associated protein 2 homolog 1 
 bdi-r.1   100840560   vacuolar protein sorting-associated protein 2 homolog 1 
 bdi-r.1   100821134   vacuolar protein sorting-associated protein 2 homolog 1 
 cre-r.1   CHLRE_04g213450v5   uncharacterized protein 

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Top 50 coexpressed genes to VPS2.1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VPS2.1 (ath-m.9 coexpression data)

CoexMap"815211"


athVPS2.1 | Entrez gene ID : 815211      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 2 2 1 1 2 2 3 3 1 2 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04144 [list] [network] Endocytosis (156 genes)
GO BP
GO:0070676 [list] [network] intralumenal vesicle formation  (5 genes)  IDA  
GO:0015031 [list] [network] protein transport  (216 genes)  IMP  
GO:0016192 [list] [network] vesicle-mediated transport  (246 genes)  ISS  
GO CC
GO:0000815 [list] [network] ESCRT III complex  (9 genes)  ISS  
GO:0005771 [list] [network] multivesicular body  (14 genes)  IDA  
GO:0005770 [list] [network] late endosome  (43 genes)  IDA  
GO:0010008 [list] [network] endosome membrane  (53 genes)  IDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001324346.1 [sequence] [blastp]
NP_565336.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto_nucl 5,  cyto 4,  nucl 3,  cysk_nucl 2,  cyto_pero 2,  cyto_E.R. 2  (predict for NP_001324346.1)
cyto 3,  mito 3,  chlo 2,  mito_plas 2,  cyto_plas 2  (predict for NP_565336.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001324346.1)
other 8,  mito 3  (predict for NP_565336.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
VPS2.1
ath-u.5
for
VPS2.1
ath-r.7
for
VPS2.1
ath-e.2
for
VPS2.1
ath-m.4.bio
for
VPS2.1
ath-m.4.hor
for
VPS2.1
ath-m.4.lig
for
VPS2.1
ath-m.4.str
for
VPS2.1
ath-m.4.tis
for
VPS2.1
bra-r.6
for
103860351
bna-r.1
for
106439778
bna-r.1
for
106418627
ghi-r.1
for
107932231
ghi-r.1
for
107929946
cit-r.1
for
102610845
gma-u.5
for
100791887
gma-u.5
for
100526885
vvi-u.5
for
100255989
ppo-u.5
for
7478111
ppo-u.5
for
18107704
mtr-u.5
for
25500541
mtr-u.5
for
25486474
sly-u.5
for
101247586
sot-r.1
for
102595344
nta-r.1
for
107764456
nta-r.1
for
107831976
osa-u.5
for
4342791
osa-u.5
for
4351205
zma-u.5
for
100193992
zma-u.5
for
103647208
zma-u.5
for
100284688
tae-r.2
for
123091770
tae-r.2
for
123096805
tae-r.2
for
123086260
hvu-r.1
for
123448277
sbi-r.1
for
8069133
sbi-r.1
for
8086026
bdi-r.1
for
100840560
bdi-r.1
for
100821134
cre-r.1
for
CHLRE_04g213450v5


Ortholog ID: 6485
Species ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa osa zma zma zma tae tae tae hvu sbi sbi bdi bdi cre
Symbol VPS2.1 LOC103860351 LOC106439778 LOC106418627 LOC107932231 LOC107929946 LOC102610845 LOC100791887 LOC100526885 LOC100255989 LOC7478111 LOC18107704 LOC25500541 LOC25486474 LOC101247586 LOC102595344 LOC107764456 LOC107831976 LOC4342791 LOC4351205 LOC100193992 LOC103647208 LOC100284688 LOC123091770 LOC123096805 LOC123086260 LOC123448277 LOC8069133 LOC8086026 LOC100840560 LOC100821134 CHLRE_04g213450v5
Function* SNF7 family protein vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1-like vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 SNF7 family protein vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 uncharacterized LOC100193992 vacuolar protein sorting-associated protein 2 homolog 1-like charged multivesicular body protein 2a vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 5
ath04120 Ubiquitin mediated proteolysis 2
ath03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 16
bna04145 Phagosome 9
bna04148 Efferocytosis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 16
bna04145 Phagosome 9
bna04148 Efferocytosis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 8
ghi03272 Virion - Hepatitis viruses 4
ghi04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 12
ghi03272 Virion - Hepatitis viruses 4
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
ghi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
gma03250 Viral life cycle - HIV-1 2
gma03272 Virion - Hepatitis viruses 2
gma03083 Polycomb repressive complex 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
gma03083 Polycomb repressive complex 2
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 6
vvi04626 Plant-pathogen interaction 2
vvi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo03250 Viral life cycle - HIV-1 2
ppo03272 Virion - Hepatitis viruses 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 3
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 8
nta03272 Virion - Hepatitis viruses 4
nta00440 Phosphonate and phosphinate metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 8
nta03272 Virion - Hepatitis viruses 4
nta00440 Phosphonate and phosphinate metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 5
osa04145 Phagosome 3
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 5
osa03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 6
zma04144 Endocytosis 4
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma04626 Plant-pathogen interaction 3
zma04144 Endocytosis 2
zma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 8
tae03250 Viral life cycle - HIV-1 3
tae03272 Virion - Hepatitis viruses 3
tae00561 Glycerolipid metabolism 3
tae00566 Sulfoquinovose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 6
tae03250 Viral life cycle - HIV-1 2
tae03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 8
tae03250 Viral life cycle - HIV-1 3
tae03272 Virion - Hepatitis viruses 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 3
hvu04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 4
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 6
sbi03250 Viral life cycle - HIV-1 3
sbi03272 Virion - Hepatitis viruses 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 5
bdi04145 Phagosome 4
bdi04148 Efferocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04130 SNARE interactions in vesicular transport 3
bdi04144 Endocytosis 2
bdi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 6
cre03250 Viral life cycle - HIV-1 2
cre03272 Virion - Hepatitis viruses 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 815211 103860351 106439778 106418627 107932231 107929946 102610845 100791887 100526885 100255989 7478111 18107704 25500541 25486474 101247586 102595344 107764456 107831976 4342791 4351205 100193992 103647208 100284688 123091770 123096805 123086260 123448277 8069133 8086026 100840560 100821134 5724208
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