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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PAG1   20S proteasome alpha subunit G1 
 ath-u.5   PAG1   20S proteasome alpha subunit G1 
 ath-r.7   PAG1   20S proteasome alpha subunit G1 
 ath-e.2   PAG1   20S proteasome alpha subunit G1 
 ath-m.4.bio   PAG1   20S proteasome alpha subunit G1 
 ath-m.4.hor   PAG1   20S proteasome alpha subunit G1 
 ath-m.4.lig   PAG1   20S proteasome alpha subunit G1 
 ath-m.4.str   PAG1   20S proteasome alpha subunit G1 
 ath-m.4.tis   PAG1   20S proteasome alpha subunit G1 
 bra-r.6   103829643   proteasome subunit alpha type-3 
 bra-r.6   103864745   proteasome subunit alpha type-3 
 bna-r.1   106448672   proteasome subunit alpha type-3 
 bna-r.1   106445441   proteasome subunit alpha type-3 
 bna-r.1   106358451   proteasome subunit alpha type-3 
 ghi-r.1   107889267   proteasome subunit alpha type-3 
 ghi-r.1   107889260   proteasome subunit alpha type-3 
 ghi-r.1   107891482   proteasome subunit alpha type-3 
 cit-r.1   102612378   proteasome subunit alpha type-3 
 gma-u.5   100527499   putative proteasome subunit alpha type-3 
 gma-u.5   100820387   proteasome subunit alpha type-3-like 
 vvi-u.5   100251722   proteasome subunit alpha type-3 
 ppo-u.5   7472985   proteasome subunit alpha type-3 
 ppo-u.5   7488180   proteasome subunit alpha type-3 
 mtr-u.5   25495758   proteasome subunit alpha type-3 
 sly-u.5   101253544   proteasome subunit alpha type-3 
 sly-u.5   101256141   proteasome subunit alpha type-3 
 sot-r.1   102600015   proteasome subunit alpha type-3 
 sot-r.1   102581342   proteasome subunit alpha type-3-like 
 nta-r.1   107832196   proteasome subunit alpha type-3 
 nta-r.1   107781489   proteasome subunit alpha type-3 
 nta-r.1   107809579   proteasome subunit alpha type-3 
 osa-u.5   4327357   proteasome subunit alpha type-3-like 
 osa-u.5   4339169   proteasome subunit alpha type-3-like 
 zma-u.5   100283656   uncharacterized LOC100283656 
 zma-u.5   100283094   proteasome subunit alpha type 3 
 zma-u.5   100383475   proteasome subunit alpha type 
 tae-r.2   123104315   proteasome subunit alpha type-3 
 tae-r.2   123122076   proteasome subunit alpha type-3 
 tae-r.2   123137636   proteasome subunit alpha type-3 
 hvu-r.1   123444163   proteasome subunit alpha type-3-like 
 hvu-r.1   123399784   proteasome subunit alpha type-3 
 sbi-r.1   8055273   proteasome subunit alpha type-3 
 sbi-r.1   8073097   proteasome subunit alpha type-3 
 bdi-r.1   100838471   proteasome subunit alpha type-3 
 cre-r.1   CHLRE_14g619550v5   uncharacterized protein 

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Top 50 coexpressed genes to PAG1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PAG1 (ath-m.9 coexpression data)

CoexMap"817244"


athPAG1 | Entrez gene ID : 817244      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 2 1 2 1 2 2 3 2 3 3 2 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03050 [list] [network] Proteasome (61 genes)
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (219 genes)  TAS  
GO CC
GO:0019773 [list] [network] proteasome core complex, alpha-subunit complex  (12 genes)  ISS  
GO:0005839 [list] [network] proteasome core complex  (23 genes)  TAS  
GO:0000502 [list] [network] proteasome complex  (53 genes)  IDA  
GO:0005777 [list] [network] peroxisome  (313 genes)  HDA  
GO:0048046 [list] [network] apoplast  (340 genes)  HDA  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0005773 [list] [network] vacuole  (984 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001323455.1 [sequence] [blastp]
NP_180270.1 [sequence] [blastp]
Subcellular
localization
wolf
cysk 9  (predict for NP_001323455.1)
cysk 9  (predict for NP_180270.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001323455.1)
other 8  (predict for NP_180270.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PAG1
ath-u.5
for
PAG1
ath-r.7
for
PAG1
ath-e.2
for
PAG1
ath-m.4.bio
for
PAG1
ath-m.4.hor
for
PAG1
ath-m.4.lig
for
PAG1
ath-m.4.str
for
PAG1
ath-m.4.tis
for
PAG1
bra-r.6
for
103829643
bra-r.6
for
103864745
bna-r.1
for
106448672
bna-r.1
for
106445441
bna-r.1
for
106358451
ghi-r.1
for
107889267
ghi-r.1
for
107889260
ghi-r.1
for
107891482
cit-r.1
for
102612378
gma-u.5
for
100527499
gma-u.5
for
100820387
vvi-u.5
for
100251722
ppo-u.5
for
7472985
ppo-u.5
for
7488180
mtr-u.5
for
25495758
sly-u.5
for
101253544
sly-u.5
for
101256141
sot-r.1
for
102600015
sot-r.1
for
102581342
nta-r.1
for
107832196
nta-r.1
for
107781489
nta-r.1
for
107809579
osa-u.5
for
4327357
osa-u.5
for
4339169
zma-u.5
for
100283656
zma-u.5
for
100283094
zma-u.5
for
100383475
tae-r.2
for
123104315
tae-r.2
for
123122076
tae-r.2
for
123137636
hvu-r.1
for
123444163
hvu-r.1
for
123399784
sbi-r.1
for
8055273
sbi-r.1
for
8073097
bdi-r.1
for
100838471
cre-r.1
for
CHLRE_14g619550v5


Ortholog ID: 4197
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi cre
Symbol PAG1 LOC103829643 LOC103864745 LOC106448672 LOC106445441 LOC106358451 LOC107889260 LOC107891482 LOC107891461 LOC102612378 LOC100527499 LOC100820387 LOC100251722 LOC7472985 LOC7488180 LOC25495758 LOC101253544 LOC101256141 LOC102600015 LOC102581342 LOC107832196 LOC107781489 LOC107809579 LOC4327357 LOC4339169 LOC100283656 LOC100283094 LOC100285986 LOC123104315 LOC123137636 LOC123182430 LOC123444163 LOC123399784 LOC8055273 LOC8073097 LOC100838471 CHLRE_14g619550v5
Function* 20S proteasome alpha subunit G1 proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 putative proteasome subunit alpha type-3 proteasome subunit alpha type-3-like proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3-like proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3-like proteasome subunit alpha type-3-like uncharacterized LOC100283656 proteasome subunit alpha type 3 proteasome subunit alpha type 3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3-like proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 proteasome subunit alpha type-3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 10
bra03040 Spliceosome 4
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 9
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 13
bna03040 Spliceosome 3
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 11
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 11
ghi00190 Oxidative phosphorylation 4
ghi00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 11
ghi00190 Oxidative phosphorylation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 9
ghi00190 Oxidative phosphorylation 2
ghi00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 17
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 10
gma00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 7
ppo04144 Endocytosis 2
ppo04145 Phagosome 2
ppo04148 Efferocytosis 2
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 7
mtr00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 16
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 18
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 8
tae00310 Lysine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 15
hvu00020 Citrate cycle (TCA cycle) 2
hvu00190 Oxidative phosphorylation 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 11
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 11
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 16
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817244 103829643 103864745 106448672 106445441 106358451 107889260 107891482 107891461 102612378 100527499 100820387 100251722 7472985 7488180 25495758 101253544 101256141 102600015 102581342 107832196 107781489 107809579 4327357 4339169 100283656 100283094 100285986 123104315 123137636 123182430 123444163 123399784 8055273 8073097 100838471 5715877
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