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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   EMB2654   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   EMB2654   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-r.7   EMB2654   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-e.2   EMB2654   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.bio   EMB2654   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.hor   EMB2654   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.lig   EMB2654   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.str   EMB2654   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.tis   EMB2654   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103866580   pentatricopeptide repeat-containing protein At2g41720 
 bna-r.1   106396458   pentatricopeptide repeat-containing protein At2g41720 
 bna-r.1   106450653   pentatricopeptide repeat-containing protein At2g41720 
 ghi-r.1   107948668   pentatricopeptide repeat-containing protein At2g41720 
 ghi-r.1   121227898   pentatricopeptide repeat-containing protein At2g41720-like 
 ghi-r.1   107902254   pentatricopeptide repeat-containing protein At2g41720 
 cit-r.1   102623809   pentatricopeptide repeat-containing protein At2g41720 
 gma-u.5   100814643   pentatricopeptide repeat-containing protein At2g41720 
 vvi-u.5   100241921   pentatricopeptide repeat-containing protein At2g41720 
 ppo-u.5   7473612   pentatricopeptide repeat-containing protein At2g41720 
 mtr-u.5   11418476   pentatricopeptide repeat-containing protein At2g41720 
 sly-u.5   101267511   pentatricopeptide repeat-containing protein At2g41720 
 sot-r.1   102602503   pentatricopeptide repeat-containing protein At2g41720 
 nta-r.1   107800374   pentatricopeptide repeat-containing protein At2g41720 
 nta-r.1   107766839   pentatricopeptide repeat-containing protein At2g41720 
 osa-u.5   4342717   pentatricopeptide repeat-containing protein At2g41720 
 zma-u.5   100383403   uncharacterized LOC100383403 
 tae-r.2   123188627   pentatricopeptide repeat-containing protein At2g41720 
 tae-r.2   123052762   pentatricopeptide repeat-containing protein At2g41720 
 tae-r.2   123045037   pentatricopeptide repeat-containing protein At2g41720 
 hvu-r.1   123426169   pentatricopeptide repeat-containing protein At2g41720 
 sbi-r.1   8083906   pentatricopeptide repeat-containing protein At2g41720 
 bdi-r.1   100829628   pentatricopeptide repeat-containing protein At2g41720 

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Top 50 coexpressed genes to EMB2654 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EMB2654 (ath-m.9 coexpression data)

CoexMap"818771"


athEMB2654 | Entrez gene ID : 818771      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 1 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010239 [list] [network] chloroplast mRNA processing  (12 genes)  IMP  
GO:0008380 [list] [network] RNA splicing  (195 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP NAS  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IMP ISM  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (75 genes)  IMP  
Protein NP_001323745.1 [sequence] [blastp]
NP_850356.1 [sequence] [blastp]
NP_850357.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  cyto 3,  cyto_nucl 3  (predict for NP_001323745.1)
chlo 4,  cyto 3,  nucl 2,  chlo_mito 2  (predict for NP_850356.1)
chlo 6,  chlo_mito 4,  mito 1,  nucl 1  (predict for NP_850357.2)
Subcellular
localization
TargetP
other 7  (predict for NP_001323745.1)
other 7  (predict for NP_850356.1)
mito 6,  other 4  (predict for NP_850357.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
EMB2654
ath-u.5
for
EMB2654
ath-r.7
for
EMB2654
ath-e.2
for
EMB2654
ath-m.4.bio
for
EMB2654
ath-m.4.hor
for
EMB2654
ath-m.4.lig
for
EMB2654
ath-m.4.str
for
EMB2654
ath-m.4.tis
for
EMB2654
bra-r.6
for
103866580
bna-r.1
for
106396458
bna-r.1
for
106450653
ghi-r.1
for
107948668
ghi-r.1
for
121227898
ghi-r.1
for
107902254
cit-r.1
for
102623809
gma-u.5
for
100814643
vvi-u.5
for
100241921
ppo-u.5
for
7473612
mtr-u.5
for
11418476
sly-u.5
for
101267511
sot-r.1
for
102602503
nta-r.1
for
107800374
nta-r.1
for
107766839
osa-u.5
for
4342717
zma-u.5
for
100383403
tae-r.2
for
123188627
tae-r.2
for
123052762
tae-r.2
for
123045037
hvu-r.1
for
123426169
sbi-r.1
for
8083906
bdi-r.1
for
100829628


Ortholog ID: 10711
Species ath bra bna bna ghi ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol EMB2654 LOC103866580 LOC106396458 LOC106450653 LOC107948668 LOC121227898 LOC107902254 LOC102623809 LOC100814643 LOC100241921 LOC7473612 LOC11418476 LOC101267511 LOC102602503 LOC107800374 LOC107766839 LOC4342717 LOC100383403 LOC123188627 LOC123052762 LOC123045037 LOC123426169 LOC8083906 LOC100829628
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720-like pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 uncharacterized LOC100383403 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720 pentatricopeptide repeat-containing protein At2g41720
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04626 Plant-pathogen interaction 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 2
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 5
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00520 Amino sugar and nucleotide sugar metabolism 2
bdi00561 Glycerolipid metabolism 2
bdi00566 Sulfoquinovose metabolism 2
bdi01250 Biosynthesis of nucleotide sugars 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818771 103866580 106396458 106450653 107948668 121227898 107902254 102623809 100814643 100241921 7473612 11418476 101267511 102602503 107800374 107766839 4342717 100383403 123188627 123052762 123045037 123426169 8083906 100829628
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