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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   LARP6b   RNA-binding protein 
 ath-u.5   LARP6b   RNA-binding protein 
 ath-r.7   LARP6b   RNA-binding protein 
 ath-e.2   LARP6b   RNA-binding protein 
 ath-m.4.bio   LARP6b   RNA-binding protein 
 ath-m.4.hor   LARP6b   RNA-binding protein 
 ath-m.4.lig   LARP6b   RNA-binding protein 
 ath-m.4.str   LARP6b   RNA-binding protein 
 ath-m.4.tis   LARP6b   RNA-binding protein 
 ath-u.5   LARP6a   RNA-binding protein 
 bra-r.6   103827742   la-related protein 6A 
 bra-r.6   103866758   la-related protein 6B 
 bra-r.6   103839619   la-related protein 6A 
 bna-r.1   125575018   la-related protein 6A-like 
 bna-r.1   106411046   la-related protein 6A 
 bna-r.1   106397029   la-related protein 6A 
 ghi-r.1   107960259   la-related protein 6A 
 ghi-r.1   107939683   la-related protein 6B 
 ghi-r.1   107938957   la-related protein 6B 
 cit-r.1   102617721   la-related protein 6A 
 cit-r.1   102615388   la-related protein 6B 
 gma-u.5   100788145   la-related protein 6A 
 gma-u.5   100807619   uncharacterized LOC100807619 
 gma-u.5   100813426   la-related protein 6B 
 vvi-u.5   100259405   la-related protein 6B 
 vvi-u.5   100250312   la-related protein 6A 
 ppo-u.5   7483585   la-related protein 6A 
 ppo-u.5   7472516   la-related protein 6B 
 ppo-u.5   7465612   la-related protein 6B 
 mtr-u.5   11441312   la-related protein 6A 
 mtr-u.5   25499761   la-related protein 6B 
 sly-u.5   101259271   la-related protein 6B 
 sly-u.5   101245912   la-related protein 6A 
 sly-u.5   101250385   la-related protein 6B-like 
 sot-r.1   102593695   la-related protein 6B-like 
 sot-r.1   102582212   la-related protein 6A 
 nta-r.1   107780928   la-related protein 6A-like 
 nta-r.1   107806201   la-related protein 6B 
 nta-r.1   107760745   la-related protein 6B-like 
 osa-u.5   4325141   la-related protein 6A 
 osa-u.5   9269121   la-related protein 6B 
 osa-u.5   4346201   la-related protein 6B 
 zma-u.5   100216671   La-related protein 6A 
 zma-u.5   103636640   uncharacterized LOC103636640 
 zma-u.5   103643076   la-related protein 6B 
 tae-r.2   123091204   la-related protein 6B 
 tae-r.2   123086775   la-related protein 6B 
 tae-r.2   123101280   la-related protein 6B 
 hvu-r.1   123408889   la-related protein 6B-like 
 hvu-r.1   123451771   la-related protein 6B-like 
 hvu-r.1   123444440   la-related protein 6A-like 
 sbi-r.1   8060902   la-related protein 6B 
 sbi-r.1   8058156   la-related protein 6B 
 sbi-r.1   8079405   la-related protein 6A 
 bdi-r.1   100842995   la-related protein 6B 
 bdi-r.1   104582867   la-related protein 6A 
 bdi-r.1   100831659   la-related protein 6B 
 cre-r.1   CHLRE_02g106250v5   uncharacterized protein 

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Top 50 coexpressed genes to LARP6b (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LARP6b (ath-m.9 coexpression data)

CoexMap"819002"


athLARP6b | Entrez gene ID : 819002      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 2 3 2 3 2 3 2 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006396 [list] [network] RNA processing  (588 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_566004.1 [sequence] [blastp]
NP_850406.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  chlo 1,  vacu 1,  pero 1  (predict for NP_566004.1)
nucl 8,  chlo 1,  vacu 1,  pero 1  (predict for NP_850406.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_566004.1)
chlo 9  (predict for NP_850406.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
LARP6b
ath-u.5
for
LARP6b
ath-r.7
for
LARP6b
ath-e.2
for
LARP6b
ath-m.4.bio
for
LARP6b
ath-m.4.hor
for
LARP6b
ath-m.4.lig
for
LARP6b
ath-m.4.str
for
LARP6b
ath-m.4.tis
for
LARP6b
ath-u.5
for
LARP6a
bra-r.6
for
103827742
bra-r.6
for
103866758
bra-r.6
for
103839619
bna-r.1
for
125575018
bna-r.1
for
106411046
bna-r.1
for
106397029
ghi-r.1
for
107960259
ghi-r.1
for
107939683
ghi-r.1
for
107938957
cit-r.1
for
102617721
cit-r.1
for
102615388
gma-u.5
for
100788145
gma-u.5
for
100807619
gma-u.5
for
100813426
vvi-u.5
for
100259405
vvi-u.5
for
100250312
ppo-u.5
for
7483585
ppo-u.5
for
7472516
ppo-u.5
for
7465612
mtr-u.5
for
11441312
mtr-u.5
for
25499761
sly-u.5
for
101259271
sly-u.5
for
101245912
sly-u.5
for
101250385
sot-r.1
for
102593695
sot-r.1
for
102582212
nta-r.1
for
107780928
nta-r.1
for
107806201
nta-r.1
for
107760745
osa-u.5
for
4325141
osa-u.5
for
9269121
osa-u.5
for
4346201
zma-u.5
for
100216671
zma-u.5
for
103636640
zma-u.5
for
103643076
tae-r.2
for
123091204
tae-r.2
for
123086775
tae-r.2
for
123101280
hvu-r.1
for
123408889
hvu-r.1
for
123451771
hvu-r.1
for
123444440
sbi-r.1
for
8060902
sbi-r.1
for
8058156
sbi-r.1
for
8079405
bdi-r.1
for
100842995
bdi-r.1
for
104582867
bdi-r.1
for
100831659
cre-r.1
for
CHLRE_02g106250v5


Ortholog ID: 1418
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sly sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol LARP6b LARP6a LOC103827742 LOC103866758 LOC103839619 LOC125575018 LOC106411046 LOC106397029 LOC107939683 LOC107938957 LOC121230866 LOC102617721 LOC102615388 LOC100788145 LOC100813426 LOC100801679 LOC100259405 LOC100250312 LOC7483585 LOC7472516 LOC7465612 LOC11441312 LOC25499761 LOC101259271 LOC101250385 LOC101263189 LOC102593695 LOC102587503 LOC107780928 LOC107817540 LOC107780684 LOC4325141 LOC9269121 LOC4346201 LOC100216671 LOC103636640 LOC103643076 LOC123091204 LOC123079210 LOC123152133 LOC123451771 LOC123444440 LOC123447826 LOC8058156 LOC8079405 LOC8076903 LOC104582867 LOC100831659 LOC100829244 CHLRE_02g106250v5
Function* RNA-binding protein RNA-binding protein la-related protein 6A la-related protein 6B la-related protein 6A la-related protein 6A-like la-related protein 6A la-related protein 6A la-related protein 6B la-related protein 6B la-related protein 6A la-related protein 6A la-related protein 6B la-related protein 6A la-related protein 6B la-related protein 6B la-related protein 6B la-related protein 6A la-related protein 6A la-related protein 6B la-related protein 6B la-related protein 6A la-related protein 6B la-related protein 6B la-related protein 6B-like la-related protein 6B la-related protein 6B-like la-related protein 6B la-related protein 6A-like la-related protein 6B-like la-related protein 6B la-related protein 6A la-related protein 6B la-related protein 6B La-related protein 6A uncharacterized LOC103636640 la-related protein 6B la-related protein 6B la-related protein 6A la-related protein 6B la-related protein 6B-like la-related protein 6A-like la-related protein 6B la-related protein 6B la-related protein 6A la-related protein 6B la-related protein 6A la-related protein 6B la-related protein 6B uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00510 N-Glycan biosynthesis 3
bra04141 Protein processing in endoplasmic reticulum 3
bra00190 Oxidative phosphorylation 3
bra00513 Various types of N-glycan biosynthesis 2
bra04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
bra00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00280 Valine, leucine and isoleucine degradation 2
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03008 Ribosome biogenesis in eukaryotes 2
gma03083 Polycomb repressive complex 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 3
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 2
nta04142 Lysosome 2
nta04145 Phagosome 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta04626 Plant-pathogen interaction 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa03008 Ribosome biogenesis in eukaryotes 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 6
osa04120 Ubiquitin mediated proteolysis 3
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae00543 Exopolysaccharide biosynthesis 3
tae00920 Sulfur metabolism 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00220 Arginine biosynthesis 2
tae00240 Pyrimidine metabolism 2
tae00250 Alanine, aspartate and glutamate metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 3
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 3
hvu03083 Polycomb repressive complex 2
hvu04130 SNARE interactions in vesicular transport 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 3
sbi04120 Ubiquitin mediated proteolysis 2
sbi03018 RNA degradation 2
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819002 834667 103827742 103866758 103839619 125575018 106411046 106397029 107939683 107938957 121230866 102617721 102615388 100788145 100813426 100801679 100259405 100250312 7483585 7472516 7465612 11441312 25499761 101259271 101250385 101263189 102593695 102587503 107780928 107817540 107780684 4325141 9269121 4346201 100216671 103636640 103643076 123091204 123079210 123152133 123451771 123444440 123447826 8058156 8079405 8076903 104582867 100831659 100829244 5725522
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