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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g106250v5   uncharacterized protein 
 ath-u.5   LARP6b   RNA-binding protein 
 ath-u.5   LARP6a   RNA-binding protein 
 gma-u.5   100801679   la-related protein 6B 
 gma-u.5   100788145   la-related protein 6A 
 gma-u.5   100813426   la-related protein 6B 
 sly-u.5   101263189   la-related protein 6B 
 sly-u.5   101245912   la-related protein 6A 
 sly-u.5   101250385   la-related protein 6B-like 
 osa-u.5   4325141   la-related protein 6A 
 osa-u.5   9269121   la-related protein 6B 
 osa-u.5   4346201   la-related protein 6B 
 zma-u.5   103636640   uncharacterized LOC103636640 
 zma-u.5   100282075   uncharacterized LOC100282075 
 zma-u.5   100217316   uncharacterized LOC100217316 
 vvi-u.5   100259405   la-related protein 6B 
 vvi-u.5   100250312   la-related protein 6A 
 ppo-u.5   7483585   la-related protein 6A 
 ppo-u.5   7472516   la-related protein 6B 
 ppo-u.5   7465612   la-related protein 6B 
 mtr-u.5   11441312   la-related protein 6A 
 mtr-u.5   25499761   la-related protein 6B 

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Top 50 coexpressed genes to CHLRE_02g106250v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g106250v5 (cre-r.1 coexpression data)

CoexMap"5725522"


creCHLRE_02g106250v5 | Entrez gene ID : 5725522    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 3 3 3 3 2 3 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006396 [list] [network] RNA processing  (507 genes)  IEA  
GO CC
GO:1990904 [list] [network] ribonucleoprotein complex  (370 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042927440.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 2,  cyto 2,  cysk_nucl 2  (predict for XP_042927440.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042927440.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g106250v5

.
ath-u.5
for
LARP6b

.
ath-u.5
for
LARP6a

.
gma-u.5
for
100801679

.
gma-u.5
for
100788145

.
gma-u.5
for
100813426

.
sly-u.5
for
101263189

.
sly-u.5
for
101245912

.
sly-u.5
for
101250385

.
osa-u.5
for
4325141

.
osa-u.5
for
9269121

.
osa-u.5
for
4346201

.
zma-u.5
for
103636640

.
zma-u.5
for
100282075

.
zma-u.5
for
100217316

.
vvi-u.5
for
100259405

.
vvi-u.5
for
100250312

.
ppo-u.5
for
7483585

.
ppo-u.5
for
7472516

.
ppo-u.5
for
7465612

.
mtr-u.5
for
11441312

.
mtr-u.5
for
25499761

.


Ortholog ID: 1418
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol LARP6b LARP6a LOC100813426 LOC100801679 LOC101259271 LOC101250385 LOC4325141 LOC4346201 LOC100216671 LOC103636640 LOC103827742 LOC103839619 LOC100259405 LOC100250312 LOC7472516 LOC7465612 LOC25499761 LOC11441312 LOC123091204 LOC123152133 LOC123447826 LOC123451771 LOC121230866 LOC107939683 LOC106411046 LOC106397029 CHLRE_02g106250v5 LOC8058156 LOC8079405 LOC102587503 LOC102593695 LOC102615388 LOC102617721 LOC100829244 LOC100831659 LOC107780928 LOC107817540
Function* RNA-binding protein RNA-binding protein la-related protein 6B la-related protein 6B la-related protein 6B la-related protein 6B-like la-related protein 6A la-related protein 6B La-related protein 6A uncharacterized LOC103636640 la-related protein 6A la-related protein 6A la-related protein 6B la-related protein 6A la-related protein 6B la-related protein 6B la-related protein 6B la-related protein 6A la-related protein 6B la-related protein 6B la-related protein 6B la-related protein 6B-like la-related protein 6A la-related protein 6B la-related protein 6A la-related protein 6A uncharacterized protein la-related protein 6B la-related protein 6A la-related protein 6B la-related protein 6B-like la-related protein 6B la-related protein 6A la-related protein 6B la-related protein 6B la-related protein 6A-like la-related protein 6B-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03008 Ribosome biogenesis in eukaryotes 2
gma03083 Polycomb repressive complex 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa03008 Ribosome biogenesis in eukaryotes 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 6
osa04120 Ubiquitin mediated proteolysis 3
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
bra00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae00543 Exopolysaccharide biosynthesis 3
tae00920 Sulfur metabolism 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 3
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 3
sbi04120 Ubiquitin mediated proteolysis 2
sbi03018 RNA degradation 2
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 2
nta04142 Lysosome 2
nta04145 Phagosome 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819002 834667 100813426 100801679 101259271 101250385 4325141 4346201 100216671 103636640 103827742 103839619 100259405 100250312 7472516 7465612 25499761 11441312 123091204 123152133 123447826 123451771 121230866 107939683 106411046 106397029 5725522 8058156 8079405 102587503 102593695 102615388 102617721 100829244 100831659 107780928 107817540
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