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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   BRM   transcription regulatory protein SNF2 
 ath-u.5   BRM   transcription regulatory protein SNF2 
 ath-r.7   BRM   transcription regulatory protein SNF2 
 ath-e.2   BRM   transcription regulatory protein SNF2 
 ath-m.4.bio   BRM   transcription regulatory protein SNF2 
 ath-m.4.hor   BRM   transcription regulatory protein SNF2 
 ath-m.4.lig   BRM   transcription regulatory protein SNF2 
 ath-m.4.str   BRM   transcription regulatory protein SNF2 
 ath-m.4.tis   BRM   transcription regulatory protein SNF2 
 bra-r.6   103866259   ATP-dependent helicase BRM 
 bra-r.6   103858197   ATP-dependent helicase BRM 
 bna-r.1   111202348   ATP-dependent helicase BRM 
 bna-r.1   106392023   ATP-dependent helicase BRM-like 
 bna-r.1   106452193   ATP-dependent helicase BRM 
 ghi-r.1   107923790   ATP-dependent helicase BRM 
 ghi-r.1   107944568   ATP-dependent helicase BRM 
 ghi-r.1   107952774   ATP-dependent helicase BRM 
 cit-r.1   102610032   ATP-dependent helicase BRM 
 cit-r.1   127901208   ATP-dependent helicase BRM-like 
 gma-u.5   100811608   ATP-dependent helicase BRM 
 gma-u.5   100807104   ATP-dependent helicase BRM 
 gma-u.5   100805894   ATP-dependent helicase BRM 
 vvi-u.5   100249945   ATP-dependent helicase BRM 
 ppo-u.5   7497210   ATP-dependent helicase BRM 
 ppo-u.5   7496980   ATP-dependent helicase BRM 
 mtr-u.5   11440396   ATP-dependent helicase BRM 
 mtr-u.5   11428961   ATP-dependent helicase BRM 
 sly-u.5   101245796   ATP-dependent helicase BRM 
 sot-r.1   102602770   ATP-dependent helicase BRM 
 nta-r.1   107762744   ATP-dependent helicase BRM-like 
 nta-r.1   107788810   ATP-dependent helicase BRM 
 osa-u.5   4328058   ATP-dependent helicase BRM 
 zma-u.5   100273430   uncharacterized LOC100273430 
 tae-r.2   123131709   ATP-dependent helicase BRM 
 tae-r.2   123135553   ATP-dependent helicase BRM 
 tae-r.2   123143128   ATP-dependent helicase BRM 
 hvu-r.1   123401356   ATP-dependent helicase BRM 
 sbi-r.1   8066511   ATP-dependent helicase BRM 
 bdi-r.1   100833895   ATP-dependent helicase BRM 

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Top 50 coexpressed genes to BRM (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to BRM (ath-m.9 coexpression data)

CoexMap"819210"


athBRM | Entrez gene ID : 819210      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 2 3 1 2 2 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03082 [list] [network] ATP-dependent chromatin remodeling (64 genes)
GO BP
GO:1903798 [list] [network] regulation of miRNA processing  (2 genes)  IDA  
GO:1900036 [list] [network] positive regulation of cellular response to heat  (6 genes)  IMP  
GO:0010199 [list] [network] organ boundary specification between lateral organs and the meristem  (9 genes)  IGI  
GO:0010050 [list] [network] vegetative phase change  (10 genes)  IGI  
GO:0010449 [list] [network] root meristem growth  (16 genes)  IGI  
GO:0090691 [list] [network] formation of plant organ boundary  (16 genes)  IMP  
GO:0040029 [list] [network] epigenetic regulation of gene expression  (174 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity  (21 genes)  IDA  
GO:0003682 [list] [network] chromatin binding  (103 genes)  IDA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001318432.1 [sequence] [blastp]
NP_001323760.1 [sequence] [blastp]
NP_001323761.1 [sequence] [blastp]
NP_001323762.1 [sequence] [blastp]
NP_182126.2 [sequence] [blastp]
NP_973695.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 4  (predict for NP_001318432.1)
chlo 6,  nucl 4  (predict for NP_001323760.1)
chlo 6,  nucl 4  (predict for NP_001323761.1)
chlo 6,  nucl 4  (predict for NP_001323762.1)
chlo 6,  nucl 4  (predict for NP_182126.2)
chlo 6,  nucl 4  (predict for NP_973695.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001318432.1)
chlo 7  (predict for NP_001323760.1)
chlo 7  (predict for NP_001323761.1)
chlo 7  (predict for NP_001323762.1)
chlo 7  (predict for NP_182126.2)
chlo 7  (predict for NP_973695.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
BRM
ath-u.5
for
BRM
ath-r.7
for
BRM
ath-e.2
for
BRM
ath-m.4.bio
for
BRM
ath-m.4.hor
for
BRM
ath-m.4.lig
for
BRM
ath-m.4.str
for
BRM
ath-m.4.tis
for
BRM
bra-r.6
for
103866259
bra-r.6
for
103858197
bna-r.1
for
111202348
bna-r.1
for
106392023
bna-r.1
for
106452193
ghi-r.1
for
107923790
ghi-r.1
for
107944568
ghi-r.1
for
107952774
cit-r.1
for
102610032
cit-r.1
for
127901208
gma-u.5
for
100811608
gma-u.5
for
100807104
gma-u.5
for
100805894
vvi-u.5
for
100249945
ppo-u.5
for
7497210
ppo-u.5
for
7496980
mtr-u.5
for
11440396
mtr-u.5
for
11428961
sly-u.5
for
101245796
sot-r.1
for
102602770
nta-r.1
for
107762744
nta-r.1
for
107788810
osa-u.5
for
4328058
zma-u.5
for
100273430
tae-r.2
for
123131709
tae-r.2
for
123135553
tae-r.2
for
123143128
hvu-r.1
for
123401356
sbi-r.1
for
8066511
bdi-r.1
for
100833895


Ortholog ID: 5492
Species ath bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol BRM LOC103866259 LOC103858197 LOC111202348 LOC106438266 LOC106429620 LOC107923790 LOC107944568 LOC121219114 LOC102610032 LOC127901208 LOC100811608 LOC100805894 LOC100793092 LOC100249945 LOC7497210 LOC7496980 LOC11440396 LOC11428961 LOC101245796 LOC102602770 LOC107762744 LOC107788810 LOC4328058 LOC100273430 LOC123131709 LOC123135553 LOC123143128 LOC123401356 LOC8066511 LOC100833895
Function* transcription regulatory protein SNF2 ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM-like ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM-like ATP-dependent helicase BRM ATP-dependent helicase BRM uncharacterized LOC100273430 ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
bna03013 Nucleocytoplasmic transport 4
bna03040 Spliceosome 2
bna03015 mRNA surveillance pathway 2
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
bna03013 Nucleocytoplasmic transport 4
bna03040 Spliceosome 2
bna03015 mRNA surveillance pathway 2
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
bna03013 Nucleocytoplasmic transport 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03083 Polycomb repressive complex 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00310 Lysine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 4
ppo03083 Polycomb repressive complex 2
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 5
ppo03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
mtr04120 Ubiquitin mediated proteolysis 2
mtr03040 Spliceosome 2
mtr00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 8
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819210 103866259 103858197 111202348 106438266 106429620 107923790 107944568 121219114 102610032 127901208 100811608 100805894 100793092 100249945 7497210 7496980 11440396 11428961 101245796 102602770 107762744 107788810 4328058 100273430 123131709 123135553 123143128 123401356 8066511 100833895
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