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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   GRF5   growth-regulating factor 5 
 ath-u.5   GRF5   growth-regulating factor 5 
 ath-r.7   GRF5   growth-regulating factor 5 
 ath-e.2   GRF5   growth-regulating factor 5 
 ath-m.4.bio   GRF5   growth-regulating factor 5 
 ath-m.4.hor   GRF5   growth-regulating factor 5 
 ath-m.4.lig   GRF5   growth-regulating factor 5 
 ath-m.4.str   GRF5   growth-regulating factor 5 
 ath-m.4.tis   GRF5   growth-regulating factor 5 
 bra-r.6   103870079   growth-regulating factor 5 
 bna-r.1   106389165   growth-regulating factor 5-like 
 bna-r.1   106381127   growth-regulating factor 5-like 
 ghi-r.1   107958784   growth-regulating factor 1 
 ghi-r.1   107893357   growth-regulating factor 6 
 ghi-r.1   107897434   growth-regulating factor 5 
 cit-r.1   102627866   growth-regulating factor 4-like 
 cit-r.1   107177665   growth-regulating factor 5 
 cit-r.1   102611455   growth-regulating factor 4-like 
 gma-u.5   GRF15   growth-regulating factor 
 gma-u.5   GRF13   growth-regulating factor 
 gma-u.5   GRF11   growth-regulating factor 
 vvi-u.5   100247998   growth-regulating factor 1 
 vvi-u.5   100259737   growth-regulating factor 4 
 ppo-u.5   18104178   growth-regulating factor 4 
 mtr-u.5   25494182   growth-regulating factor 1 
 mtr-u.5   25479294   growth-regulating factor 4 
 mtr-u.5   25486490   growth-regulating factor 1 
 sly-u.5   101245679   growth-regulating factor 4-like 
 sly-u.5   101255511   growth-regulating factor 6-like 
 sly-u.5   101263989   growth-regulating factor 4 
 sot-r.1   102580024   growth-regulating factor 4-like 
 sot-r.1   102584254   growth-regulating factor 4-like 
 sot-r.1   102591630   growth-regulating factor 4-like 
 nta-r.1   107782296   growth-regulating factor 4-like 
 nta-r.1   107774428   growth-regulating factor 1-like 
 nta-r.1   107772772   growth-regulating factor 3-like 
 osa-u.5   4330436   growth-regulating factor 4-like 
 zma-u.5   103627811   growth-regulating factor 1-like 
 zma-u.5   100101543   uncharacterized LOC100101543 
 zma-u.5   100125642   uncharacterized LOC100125642 
 tae-r.2   123145192   growth-regulating factor 4 
 tae-r.2   123138478   growth-regulating factor 1 
 tae-r.2   123128605   growth-regulating factor 1 
 hvu-r.1   123408772   growth-regulating factor 5-like 
 hvu-r.1   123404808   growth-regulating factor 4-like 
 hvu-r.1   123403172   growth-regulating factor 1-like 
 sbi-r.1   8073168   growth-regulating factor 4 
 sbi-r.1   8072276   growth-regulating factor 3 
 sbi-r.1   8070748   growth-regulating factor 2 
 bdi-r.1   100845697   growth-regulating factor 1 
 bdi-r.1   100842886   growth-regulating factor 5 
 bdi-r.1   100835287   growth-regulating factor 2 

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Top 50 coexpressed genes to GRF5 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GRF5 (ath-m.9 coexpression data)

CoexMap"820609"


athGRF5 | Entrez gene ID : 820609      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 3 3 2 1 3 3 3 3 1 3 3 3 3 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009739 [list] [network] response to gibberellin  (125 genes)  IEP IMP  
GO:0006351 [list] [network] DNA-templated transcription  (160 genes)  IEA  
GO:0048366 [list] [network] leaf development  (371 genes)  IMP TAS  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM ISS  
GO MF
GO:0005524 [list] [network] ATP binding  (321 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_188012.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_188012.2)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for NP_188012.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
GRF5
ath-u.5
for
GRF5
ath-r.7
for
GRF5
ath-e.2
for
GRF5
ath-m.4.bio
for
GRF5
ath-m.4.hor
for
GRF5
ath-m.4.lig
for
GRF5
ath-m.4.str
for
GRF5
ath-m.4.tis
for
GRF5
bra-r.6
for
103870079
bna-r.1
for
106389165
bna-r.1
for
106381127
ghi-r.1
for
107958784
ghi-r.1
for
107893357
ghi-r.1
for
107897434
cit-r.1
for
102627866
cit-r.1
for
107177665
cit-r.1
for
102611455
gma-u.5
for
GRF15
gma-u.5
for
GRF13
gma-u.5
for
GRF11
vvi-u.5
for
100247998
vvi-u.5
for
100259737
ppo-u.5
for
18104178
mtr-u.5
for
25494182
mtr-u.5
for
25479294
mtr-u.5
for
25486490
sly-u.5
for
101245679
sly-u.5
for
101255511
sly-u.5
for
101263989
sot-r.1
for
102580024
sot-r.1
for
102584254
sot-r.1
for
102591630
nta-r.1
for
107782296
nta-r.1
for
107774428
nta-r.1
for
107772772
osa-u.5
for
4330436
zma-u.5
for
103627811
zma-u.5
for
100101543
zma-u.5
for
100125642
tae-r.2
for
123145192
tae-r.2
for
123138478
tae-r.2
for
123128605
hvu-r.1
for
123408772
hvu-r.1
for
123404808
hvu-r.1
for
123403172
sbi-r.1
for
8073168
sbi-r.1
for
8072276
sbi-r.1
for
8070748
bdi-r.1
for
100845697
bdi-r.1
for
100842886
bdi-r.1
for
100835287


Ortholog ID: 673
Species ath bra bna bna ghi ghi ghi cit cit cit gma gma gma vvi vvi ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi bdi
Symbol GRF5 LOC103870079 LOC106381127 LOC111207183 LOC107958784 LOC107950614 LOC107951879 LOC102627866 LOC107177665 LOC102612529 GRF15 GRF13 GRF11 LOC100247998 LOC100259737 LOC18094082 LOC25479294 LOC25486490 LOC11429462 LOC101255511 LOC101263989 LOC101267047 LOC102580024 LOC102591630 LOC102601897 LOC107772772 LOC107821683 LOC107812877 LOC4330436 LOC4330903 LOC103627811 GRF1 LOC100101536 LOC123128605 LOC123128103 LOC123166486 LOC123408772 LOC123404808 LOC8072276 LOC8070748 LOC8081935 LOC100845697 LOC100842886 LOC100836260
Function* growth-regulating factor 5 growth-regulating factor 5 growth-regulating factor 5-like growth-regulating factor 5 growth-regulating factor 1 growth-regulating factor 4 growth-regulating factor 4 growth-regulating factor 4-like growth-regulating factor 5 growth-regulating factor 6 growth-regulating factor growth-regulating factor growth-regulating factor growth-regulating factor 1 growth-regulating factor 4 growth-regulating factor 4 growth-regulating factor 4 growth-regulating factor 1 growth-regulating factor 5 growth-regulating factor 6-like growth-regulating factor 4 growth-regulating factor 4-like growth-regulating factor 4-like growth-regulating factor 4-like growth-regulating factor 1 growth-regulating factor 3-like growth-regulating factor 4-like growth-regulating factor 4 growth-regulating factor 4-like growth-regulating factor 1-like growth-regulating factor 1-like growth-regulating factor 1-like growth-regulating factor 3-like growth-regulating factor 1 growth-regulating factor 4 growth-regulating factor 5 growth-regulating factor 5-like growth-regulating factor 4-like growth-regulating factor 3 growth-regulating factor 2 growth-regulating factor 1 growth-regulating factor 1 growth-regulating factor 5 growth-regulating factor 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00460 Cyanoamino acid metabolism 2
cit00500 Starch and sucrose metabolism 2
cit00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00360 Phenylalanine metabolism 2
vvi00380 Tryptophan metabolism 2
vvi00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta02010 ABC transporters 2
nta04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00062 Fatty acid elongation 3
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00906 Carotenoid biosynthesis 2
hvu04070 Phosphatidylinositol signaling system 2
hvu00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820609 103870079 106381127 111207183 107958784 107950614 107951879 102627866 107177665 102612529 100781613 100787226 100787567 100247998 100259737 18094082 25479294 25486490 11429462 101255511 101263989 101267047 102580024 102591630 102601897 107772772 107821683 107812877 4330436 4330903 103627811 100101535 100101536 123128605 123128103 123166486 123408772 123404808 8072276 8070748 8081935 100845697 100842886 100836260
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