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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT3G15010   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT3G15010   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   AT3G15010   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   AT3G15010   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   AT3G15010   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.hor   AT3G15010   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   AT3G15010   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   AT3G15010   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   AT3G15010   RNA-binding (RRM/RBD/RNP motifs) family protein 
 bra-r.6   103868443   UBP1-associated protein 2C 
 bra-r.6   103871138   UBP1-associated protein 2C 
 bna-r.1   106451594   UBP1-associated protein 2C-like 
 bna-r.1   106451461   UBP1-associated protein 2C 
 bna-r.1   106436432   UBP1-associated protein 2C-like 
 ghi-r.1   107903667   UBP1-associated protein 2C 
 ghi-r.1   107917744   UBP1-associated protein 2C 
 ghi-r.1   107948717   UBP1-associated protein 2C 
 cit-r.1   102614751   UBP1-associated protein 2C 
 gma-u.5   100776220   UBP1-associated protein 2C 
 gma-u.5   100816590   UBP1-associated protein 2C 
 gma-u.5   100804230   UBP1-associated protein 2C 
 vvi-u.5   100248626   uncharacterized LOC100248626 
 ppo-u.5   7470218   UBP1-associated protein 2C 
 ppo-u.5   7455913   UBP1-associated protein 2C 
 ppo-u.5   7491349   UBP1-associated protein 2C 
 mtr-u.5   11444562   UBP1-associated protein 2C 
 mtr-u.5   25502531   UBP1-associated protein 2C 
 sly-u.5   101261559   UBP1-associated protein 2C 
 sly-u.5   101259124   UBP1-associated protein 2C-like 
 sot-r.1   102604895   UBP1-associated protein 2C-like 
 sot-r.1   102605340   UBP1-associated protein 2C-like 
 nta-r.1   107811627   UBP1-associated protein 2C-like 
 nta-r.1   107786633   UBP1-associated protein 2C 
 nta-r.1   107759935   UBP1-associated protein 2C-like 
 osa-u.5   4326641   UBP1-associated protein 2C 
 zma-u.5   100284566   heterogeneous nuclear ribonucleoprotein A3-like protein 2 
 zma-u.5   100382178   UBP1-associated protein 2C 
 tae-r.2   123078559   UBP1-associated protein 2C 
 tae-r.2   123070113   UBP1-associated protein 2C 
 tae-r.2   123061476   UBP1-associated protein 2C 
 hvu-r.1   123443873   UBP1-associated protein 2C 
 sbi-r.1   8084824   UBP1-associated protein 2C 
 bdi-r.1   100825606   UBP1-associated protein 2C 

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Top 50 coexpressed genes to AT3G15010 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G15010 (ath-m.9 coexpression data)

CoexMap"820730"


athAT3G15010 | Entrez gene ID : 820730      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 3 1 3 2 2 2 3 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0009693 [list] [network] ethylene biosynthetic process  (22 genes)  IMP  
GO:0012501 [list] [network] programmed cell death  (103 genes)  IMP  
GO:0010150 [list] [network] leaf senescence  (128 genes)  IMP  
GO:0006952 [list] [network] defense response  (1016 genes)  IMP  
GO CC
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  RCA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_188119.1 [sequence] [blastp]
NP_974317.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto_nucl 4,  pero 1  (predict for NP_188119.1)
nucl 7,  cyto_nucl 4,  pero 1  (predict for NP_974317.1)
Subcellular
localization
TargetP
other 8  (predict for NP_188119.1)
other 8  (predict for NP_974317.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT3G15010
ath-u.5
for
AT3G15010
ath-r.7
for
AT3G15010
ath-e.2
for
AT3G15010
ath-m.4.bio
for
AT3G15010
ath-m.4.hor
for
AT3G15010
ath-m.4.lig
for
AT3G15010
ath-m.4.str
for
AT3G15010
ath-m.4.tis
for
AT3G15010
bra-r.6
for
103868443
bra-r.6
for
103871138
bna-r.1
for
106451594
bna-r.1
for
106451461
bna-r.1
for
106436432
ghi-r.1
for
107903667
ghi-r.1
for
107917744
ghi-r.1
for
107948717
cit-r.1
for
102614751
gma-u.5
for
100776220
gma-u.5
for
100816590
gma-u.5
for
100804230
vvi-u.5
for
100248626
ppo-u.5
for
7470218
ppo-u.5
for
7455913
ppo-u.5
for
7491349
mtr-u.5
for
11444562
mtr-u.5
for
25502531
sly-u.5
for
101261559
sly-u.5
for
101259124
sot-r.1
for
102604895
sot-r.1
for
102605340
nta-r.1
for
107811627
nta-r.1
for
107786633
nta-r.1
for
107759935
osa-u.5
for
4326641
zma-u.5
for
100284566
zma-u.5
for
100382178
tae-r.2
for
123078559
tae-r.2
for
123070113
tae-r.2
for
123061476
hvu-r.1
for
123443873
sbi-r.1
for
8084824
bdi-r.1
for
100825606


Ortholog ID: 4905
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol AT3G15010 LOC103868443 LOC103871138 LOC106451594 LOC106451461 LOC106436432 LOC107917744 LOC107948717 LOC107917736 LOC102614751 LOC100776220 LOC100816590 LOC100804230 LOC100248626 LOC7470218 LOC7455913 LOC7491349 LOC11444562 LOC25502531 LOC101261559 LOC101259124 LOC102604895 LOC102605340 LOC107811627 LOC107759935 LOC107795041 LOC4326641 LOC100284566 LOC100382178 LOC123078559 LOC123070113 LOC123061476 LOC123443873 LOC8084824 LOC100825606
Function* RNA-binding (RRM/RBD/RNP motifs) family protein UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C-like UBP1-associated protein 2C UBP1-associated protein 2C-like UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C uncharacterized LOC100248626 UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C-like UBP1-associated protein 2C-like UBP1-associated protein 2C-like UBP1-associated protein 2C-like UBP1-associated protein 2C-like UBP1-associated protein 2C UBP1-associated protein 2C heterogeneous nuclear ribonucleoprotein A3-like protein 2 UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C UBP1-associated protein 2C
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi03015 mRNA surveillance pathway 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03015 mRNA surveillance pathway 2
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit00270 Cysteine and methionine metabolism 2
cit00350 Tyrosine metabolism 2
cit00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 7
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
mtr03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
mtr03015 mRNA surveillance pathway 3
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 8
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 5
osa03040 Spliceosome 5
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 9
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae03015 mRNA surveillance pathway 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 12
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi03040 Spliceosome 3
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
bdi03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820730 103868443 103871138 106451594 106451461 106436432 107917744 107948717 107917736 102614751 100776220 100816590 100804230 100248626 7470218 7455913 7491349 11444562 25502531 101261559 101259124 102604895 102605340 107811627 107759935 107795041 4326641 100284566 100382178 123078559 123070113 123061476 123443873 8084824 100825606
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